Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0857 ATGAGCCGCAAGCGCGAGAAACCCTACTTTTCCCGCCACGCTCCGTACTCTCAGTCTATGCCTAAGAGGCGTCGACCTCTTCCCGTTCCTGCTCCGGAACCCACCTCCGACAATGGCGCAGACAAGCACGCAACAAGGCCGCCGCCGCCTTGTGCGATGGTGGTTATGGGTCTCCCTTTAGACTGCTCTGTTCTCGATCTCAAATCCCGATTCGAGATCTACGGTGCCATCTGCCGCATACGCATCGACCGTGACGGAGTTGGCTACATTACCTATCGGACCAAGGAATCCGCCGATGCCGCTATAGCTGCTGCACTCGACCCATCTTTCGGCATCACTGTCAGTTCGAAAAGGGTTCAGGTATTGTGGGCGACTGATCCTCTGGCCATGTGGAGGGAAGGAGTAGGGAATAGTAACAAGGAGAAAGGGTCGAGGTCAAAACTCGTGCGGGCTGAGATACCATTAAGCAGACATGGAAGAGGTAATAAACTCGCCTCAGCTATAGTGAATACCAAGAATAGTGAGCCTAGCTCAAGTCGAGATCTGCCTTTCCGGGCAAGAGAAATCGTGGCTTATGATGACATTCTGTAG 591 0.5347 MSRKREKPYFSRHAPYSQSMPKRRRPLPVPAPEPTSDNGADKHATRPPPPCAMVVMGLPLDCSVLDLKSRFEIYGAICRIRIDRDGVGYITYRTKESADAAIAAALDPSFGITVSSKRVQVLWATDPLAMWREGVGNSNKEKGSRSKLVRAEIPLSRHGRGNKLASAIVNTKNSEPSSSRDLPFRAREIVAYDDIL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0857 196 CDD RRM_SF 55 97 - -
Lele54g0857 196 SMART rrm1_1 52 122 IPR000504 GO:0003723
Lele54g0857 196 Gene3D - 33 164 IPR012677 -
Lele54g0857 196 PANTHER GEO13361P1-RELATED 30 151 - -
Lele54g0857 196 SUPERFAMILY RNA-binding domain, RBD 17 132 IPR035979 GO:0003676
Lele54g0857 196 MobiDBLite consensus disorder prediction 1 48 - -
Lele54g0857 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 104 IPR000504 GO:0003723
Lele54g0857 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 126 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0857 Lele-ChrLele54 15212204 15213068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0857 1 196 Homeobox Transcription Factor Family AT1G27050 51.659 2.88e-61 187