Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0856 ATGGCCTCACCTGGTCCTAATAAGCTTTTTCCTCCCTCAAATCTCACTGCTTTTCTTCAACACGAAATCCTTCCTTCTTCTTCTCCTTCTTCTCATGTTCTTGACTCCTTCTTGCTTCACCACTCTGACCCCTCCTTTCAAGGTTCAAAACCTCTGGTTGATTTCGAGAATGTTAGTGGAAGCACAGTCACAGAATTGCCATTCTTCCAACAAGGTCTGGGGAAAGAAGACAACACTGAAGAGGAATACGATGCGTGCTTTCATCAACCTGCAGGAAAGAAGAGGAGGCTCACAGACCAACAAGTTCAATTCCTTGAGAAGAACTTCGAGTTAGAAAACAAGCTCGAACCAGAAAGAAAAATTAAACTCGGTAAAGAACTCGGATTGCGACCAAGGCAAGTCGCTATTTGGTTCCAGAACCGAAGAGCCCGGTTCAAAACCAAACAGCTAGAAAAAGACTACACCACCTTAAAATCTAGCTACGACAAACTCAAAAGTGACTATGACAATCTTCTTCACCAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAAGTTGATAGGGAGAGATCATGAAGAGAAAGAAGAGGATTATGACAAGTGTGCTGATGTTTTGATCTCAAACAATAATAATGTGGTTTCTGAAAATCGGTCAAAAGTTGAAAAGGTTCCTACAGTAATATGCAAGCAAGAAGATGCCAATTCTGCTAAAAGTGATGTGTTTGATTCAGATAGCCCACACCACACTGCAGATTCGTCCCATGCCGAATTCGAAACAGAGCACTCAGATTTCTCACAGGACGAAGAAGACAACCTCAGTCGTCGTCTTCATCATCATCATCATCATCATAACCTCTTGAGTGATCTCCCATGTTTATTACCAAAGGTTGAAGAAGAGCCCTGTAACTTTGGATTCCCATCTGATCAAGATCAAGCCTTCTGTTTTTGGTCTTATTAA 966 0.4151 MASPGPNKLFPPSNLTAFLQHEILPSSSPSSHVLDSFLLHHSDPSFQGSKPLVDFENVSGSTVTELPFFQQGLGKEDNTEEEYDACFHQPAGKKRRLTDQQVQFLEKNFELENKLEPERKIKLGKELGLRPRQVAIWFQNRRARFKTKQLEKDYTTLKSSYDKLKSDYDNLLHQNDKLKEEVNSLKNKLIGRDHEEKEEDYDKCADVLISNNNNVVSENRSKVEKVPTVICKQEDANSAKSDVFDSDSPHHTADSSHAEFETEHSDFSQDEEDNLSRRLHHHHHHHNLLSDLPCLLPKVEEEPCNFGFPSDQDQAFCFWSY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0856 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 73 249 IPR045224 GO:0003700
Lele54g0856 321 Pfam Homeobox associated leucine zipper 148 189 IPR003106 GO:0006355|GO:0043565
Lele54g0856 321 SUPERFAMILY Homeodomain-like 86 150 IPR009057 -
Lele54g0856 321 Coils Coil 147 188 - -
Lele54g0856 321 FunFam homeobox-leucine zipper protein ATHB-6-like 96 142 - -
Lele54g0856 321 SMART HOX_1 91 152 IPR001356 GO:0003677
Lele54g0856 321 Pfam Homeodomain 93 146 IPR001356 GO:0003677
Lele54g0856 321 CDD homeodomain 93 149 IPR001356 GO:0003677
Lele54g0856 321 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Lele54g0856 321 Gene3D - 87 155 - -
Lele54g0856 321 MobiDBLite consensus disorder prediction 240 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0856 Lele-ChrLele54 15200445 15201672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0856 30 198 Homeobox Transcription Factor Family AT3G01470 48.538 3.90e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele54g0856 Homeodomain 6.5e-15 CL0123