Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0848 ATGGGGAAAATAAACAGAAATAGTCCCTTATTTTCTTTCTTTTTCTTGATCTGTTGGGTAGCCATTCCTACCCTCCATGCGAATGTGTTAGAGACTGAAGCTTATTGGCAAGCGCATGCCAAAGAATTTGATCAGTATTGGCATGAAAGAGCCCACGAAGCTGAAAAGATCAACAAGGAACAATATCAATCTAACCCATTTGAAGTCGTGGGCAACCTCACCGCCAGTGTCGATAGAATGCTGCTTGGCAGAGGGGATGGAGGAAGGAACTTGAGACAACGTCTTGGCGTCATTCGTGAAGGTGCATGCATGGCCACCAACCCAATTGATAGGTGCTGGAGATGCGATCCCAACTGGGAGAAAGACCGCCAGAAGTTGGCTGATTGTGCACTAGGATTTGGGAAAGGCACAACTGGTGGAAAGGGTGGTCCATACTATGTGGTGACAGATCCCTCAGATGATGATATGCTTAACCCCAAAGAAGGTACCCTTAGGCATGCAGTTACAAGGAAAGGTCCCTTGTGGATTATCTTTAAACACAGCATGGTGATTAAGCTGAAACAGGAGCTAATTATGGCTGGGGATAAGACCATTGATGGCAGAGGAGCTTATGTTGTAATCACAGGAGGGGCCGGCATTACCATCCAGTATATCAAGAATGTGATCATTCATAACATTAAGATCTTCAACATAGTGCCTACCAGTGGTGGAATGATTAGAGATAGTGAAGAACATTATGGTTTGAGGACACAAAGCGATGGTGATGGGATTTCAATCTTTGGCTCCAGCAAAGTCTGGATTGATCATATTTCCATGAGCAATTGCGGAGATGGACTCATAGATGCCATCATGGGATCCACTGCCATCACCATCTCCAACTGCCATTTCACAAGGCACAATGAGGTGATGTTGTTTGGTGCCAGTGACAGCTATGGAGGAGACAAGATTATGCAAATCACAGTGGCCTTCAATCACTTTGGACAGGGATTAATCCAAAGGATGCCAAGGTGCAGGTGGGGTTTCTTTCATGTTGTTAACAATGATTACACTCATTGGGAAATGTACGCCATTGGCGGCAGCAAGCAGCCTACAATCATCAGTGAGGGTAACAGATTCATAGCCCCGAATAACATATTTTCCAAAGAGGTGTGTAAGAGAGAGTACTCACCAGAGGAAGTGTGGAAGAACTGGCAATGGAGATCAATCAACGACCTACTCATGAACGGAGCTACGTTCGCGCAATCTGGGATGAATCTTCCAGTGTCCACGCGTGACATGCTCAAGGCCAGGCCTGGATCATACGCCTCAAGACTCACACGCTTTTCCGGAATCATCAAGTGCCACGTGGGTCAGCCCTGCTAA 1362 0.4618 MGKINRNSPLFSFFFLICWVAIPTLHANVLETEAYWQAHAKEFDQYWHERAHEAEKINKEQYQSNPFEVVGNLTASVDRMLLGRGDGGRNLRQRLGVIREGACMATNPIDRCWRCDPNWEKDRQKLADCALGFGKGTTGGKGGPYYVVTDPSDDDMLNPKEGTLRHAVTRKGPLWIIFKHSMVIKLKQELIMAGDKTIDGRGAYVVITGGAGITIQYIKNVIIHNIKIFNIVPTSGGMIRDSEEHYGLRTQSDGDGISIFGSSKVWIDHISMSNCGDGLIDAIMGSTAITISNCHFTRHNEVMLFGASDSYGGDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVVNNDYTHWEMYAIGGSKQPTIISEGNRFIAPNNIFSKEVCKREYSPEEVWKNWQWRSINDLLMNGATFAQSGMNLPVSTRDMLKARPGSYASRLTRFSGIIKCHVGQPC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0848 453 SUPERFAMILY Pectin lyase-like 107 440 IPR011050 -
Lele54g0848 453 SMART amb_all 181 378 IPR002022 -
Lele54g0848 453 Pfam Pectate lyase 192 372 IPR002022 -
Lele54g0848 453 PANTHER PECTATE LYASE 18-RELATED 54 451 IPR045032 GO:0030570
Lele54g0848 453 Gene3D - 106 446 IPR012334 -
Lele54g0848 453 Pfam Pectate lyase, N terminus 41 81 IPR007524 GO:0030570
Lele54g0848 453 PRINTS Pollen allergen Amb family signature 355 374 IPR018082 -
Lele54g0848 453 PRINTS Pollen allergen Amb family signature 397 421 IPR018082 -
Lele54g0848 453 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Lele54g0848 453 PRINTS Pollen allergen Amb family signature 253 274 IPR018082 -
Lele54g0848 453 PRINTS Pollen allergen Amb family signature 129 146 IPR018082 -
Lele54g0848 453 PRINTS Pollen allergen Amb family signature 153 178 IPR018082 -
Lele54g0848 453 PRINTS Pollen allergen Amb family signature 189 205 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0848 Lele-ChrLele54 15103634 15105424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0848 4 453 Polysaccharide Lyase AT1G14420 52.790 3.34e-177 502