Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0845 ATGAGATTCTTCCCATGCATCGCTTGTAGCGATGATTCCTTTTCGTTGTCAGACCCAAAACAGGTGGCCTCTCTCTCTCCCCCCCCCCCTCTCGTGAATGTTATGTTTTTGAGGGCGCAACTTGTGGGTTTTCCTCTGGTTTTTGCTGATGCAGTGATTTTGTGGCAGTTGGGTTATGGTCCTCCTGAGGAATTGTTGGGTCTCGATGTGGAACTCAAGACGAGCAATGGCAGCTCTCAAACATCGGAGCCAAGGTCGTGGTTTGGTCCAAATGGACAGTACATTAGAGAGTTACCTTGTCCAAGCTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGCGGAATTGAAAGATCAAGATCAGACTGTCCAAAGTGTGGTGGGAAGGGTATTGTTACTTGCCATCAGTGTTCAGGAGCTCGTGTTACTTGGGAAGAATCAATTGATGAAAGACCATGGGAAAGAGCACGTTCCATTTCCCCACTCAAAGTGAAGGAAGATGATGAAGTTGATAATTTAGACATAAAGCTGGATGTGAAGAAAAAATCCAAGCGCGTTTACCAGTCACCACCTCCTGAAGTTGGATTAAAGATTAGTCGCTCATTGAAAGATCTCAATGCAAAAACGGGTCTGTTTAGCAAGAGAATGAAGATTATCCATCGTGATCCCAAGCTTCATGCGCAGAGAGTGGCTGCGATTAAGAAATCCAAGGGAACTGATGCAGCTAGAAAGCGCACCTCTGAAACTATGAAAGCTTTCTTTAGTAACCCAGAAAATCGACATAAAAGGAGCATTGCCATGAAAGGAGTGAATTTCTTCTGCCAAAACTGTGGACGGGAAGGGCATAGGAGACACTACTGTCCAGAACTGAAGGAAAGTTTGGTGGATCGGCAATTCACGTGCCGGCTATGTGGGGAAAAAGGCCATAACAGAAGAACATGCAGCAAGTTAAGGATAACCCATCGAAATGGCAGACCTGTAAAACTTTATCGCTGTAAAAATTGTCATCAATATGGCCATAATCGCAGGACATGCCCTCCATTACTTGCTACCTCCAAAACGACAGCTTCTCCAAGACCATACAAGTGTCGTTTGTGCCTCAAGAATGGCCACAATATCAGGACATGCCCTACTACAAGAGCTACTAGTAGTACTCAACATGCCCAAGATTAA 1173 0.4535 MRFFPCIACSDDSFSLSDPKQVASLSPPPPLVNVMFLRAQLVGFPLVFADAVILWQLGYGPPEELLGLDVELKTSNGSSQTSEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCGGKGIVTCHQCSGARVTWEESIDERPWERARSISPLKVKEDDEVDNLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKDLNAKTGLFSKRMKIIHRDPKLHAQRVAAIKKSKGTDAARKRTSETMKAFFSNPENRHKRSIAMKGVNFFCQNCGREGHRRHYCPELKESLVDRQFTCRLCGEKGHNRRTCSKLRITHRNGRPVKLYRCKNCHQYGHNRRTCPPLLATSKTTASPRPYKCRLCLKNGHNIRTCPTTRATSSTQHAQD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0845 390 SUPERFAMILY Retrovirus zinc finger-like domains 323 380 IPR036875 GO:0003676|GO:0008270
Lele54g0845 390 Gene3D - 265 317 - -
Lele54g0845 390 Gene3D - 328 389 - -
Lele54g0845 390 ProSiteProfiles Zinc finger CCHC-type profile. 274 289 IPR001878 GO:0003676|GO:0008270
Lele54g0845 390 ProSiteProfiles Zinc finger CCHC-type profile. 301 316 IPR001878 GO:0003676|GO:0008270
Lele54g0845 390 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 323 381 - -
Lele54g0845 390 SMART c2hcfinal6 273 289 IPR001878 GO:0003676|GO:0008270
Lele54g0845 390 SMART c2hcfinal6 300 316 IPR001878 GO:0003676|GO:0008270
Lele54g0845 390 SMART c2hcfinal6 362 378 IPR001878 GO:0003676|GO:0008270
Lele54g0845 390 SMART c2hcfinal6 331 347 IPR001878 GO:0003676|GO:0008270
Lele54g0845 390 Pfam Zinc knuckle 358 378 IPR025829 -
Lele54g0845 390 SUPERFAMILY Retrovirus zinc finger-like domains 271 317 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0845 Lele-ChrLele54 15088573 15092208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0845 56 384 C2H2 Transcription Factor Family AT5G20220 62.722 1.82e-149 427