Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0844 ATGTCGCAGCTCCACTATCTATCTTCTTCTTCCTCACTCACGACGACACAGTGTTCCATTCAACTCTGCCCTCCCCACAGTTTCTATCCAAAGAAGTCCCTTTCTTTTTGCCCTTCTTCAACTTCCCGTGCCTCCAACTTCTCCGTCGCCCTCTCATCCTCCAGCAGAAACCCATTTTATATCAAATGTCGCCAATCCGAGTACTTTGAACAACAAAGCTTCACCAGACCCATCAGAAATGCAAACGGAAACGAAGCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTGGGTCACTCAGTATACAAAGGGAAGGCTGCGCTTACGGTGACTCCCAGGCCTCCAGAGTTTGCTTCATTGGAGTCAGGGGCATTCAAAGTATCTCGGGAAGGTTATGTGCTGCTTCAGTTCGCTCCTGCAGTTGGTATGCGCCAGTATGACTGGAACAGAAAGCAGGTATTCTCTCTATCAGTGAGTGAAATGGGAAATGTAATTAGCCTTGGTGCAAGGGATTCGTGTGAATTTTTTCATGATCCTTTTAAGGGGAAGAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTTCCAGATGGTTCTGGTCACTTTTTTAACCTAAGTGTTCAAAACAAGATTGAGAACGTGGATGAAAGCATCTATATCCCTATCACAAAAGCAGAGCTATCAGTTTTCAACTCAATTTTCAATTTTATCATGCCATACCTTCTGGGTTGGCATGCGTTTGCAAATTCTATAAAACCAGAGGATCAAAGGCGATTGAATAACGCCAATCCAAGATATGGAGGAGACTTTGAATGGAGCAGATAG 831 0.4465 MSQLHYLSSSSSLTTTQCSIQLCPPHSFYPKKSLSFCPSSTSRASNFSVALSSSSRNPFYIKCRQSEYFEQQSFTRPIRNANGNEAVGALPPRVYVGHSVYKGKAALTVTPRPPEFASLESGAFKVSREGYVLLQFAPAVGMRQYDWNRKQVFSLSVSEMGNVISLGARDSCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKIENVDESIYIPITKAELSVFNSIFNFIMPYLLGWHAFANSIKPEDQRRLNNANPRYGGDFEWSR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0844 276 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 85 260 - -
Lele54g0844 276 Pfam Whirly transcription factor 100 234 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lele54g0844 276 SUPERFAMILY ssDNA-binding transcriptional regulator domain 92 276 IPR009044 GO:0003677|GO:0006355
Lele54g0844 276 Gene3D Transcriptional Coactivator Pc4; Chain A 87 264 IPR009044 GO:0003677|GO:0006355
Lele54g0844 276 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 55 276 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0844 Lele-ChrLele54 15076694 15079364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0844 47 276 Whirly Transcription Factor Family AT1G14410 66.957 9.55e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lele54g0844 Whirly 1.4e-61 CL0609