LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele54g0833	ATGGCTTTCTTCCCAGCAAATTTCATGTTACAGAACCCTCATCAAGAAGACCACCACCAACCTCCACCGTCTCTCAACTCAATTCTACCTCAAGATTATCATGGAGGGGCGTCTCTTCTGGGGAAGAGATCTATGACATTTTCAGGGCTTGATCTTGGAGGTGAAGAAGGAAACAATGGTGATGAAGACTTGTCTGATGATGGATCTCAAGCTGGGGAGAAGAAGAGAAGGCTGAACATGGAACAAGTGAAAACACTTGAGAAGAGCTTTGAGATTGGAAACAAACTTGAGCCTGAGAGAAAAATGCAACTGGCTAGAGCTCTTGGTCTGCAACCTAGGCAGATTGCTATATGGTTCCAGAACAGAAGAGCAAGATGGAAGACAAAGCAGTTGGAAAAAGACTATGATCTTCTCAAAAGACAATATGATGCCATCAAAGCTGATAATGATGCCCTTCAAGCTCAAAACCAACAACTCCAAGCAGAGATACTGGCACTGAAAAGAAGAGAAGTACCAACTGAATCTATAAACCTGAATAAGGAAACTGAGGGATCTTGCAGCAATCGGAGTGAGAATAGTTCAGATATTAAGTTGGATATCTCAAGAACACCTGCTATAGATAGTCCTATATCAACTCATCATCATCATCAGATTACAAGCAGAACCTTATTTCAATCATCAGCATCTAATAATTCTGCAGCTAGGCCTTCTTCAGGAGGAGTGGCTCAGCTTTTTCAAACCTCTTCAAGACCAGAGCTTCATTGCCATAATCAGAAGAATATTGATCATATGGTCAAAGAAGAGAGCTTGAGCAACATGTTTTGTGGGATTGATGATCAAACTGGGTTCTGGCCTTGGTTGGAGCAGCAACATTTCAATTGA	882	0.4172	MAFFPANFMLQNPHQEDHHQPPPSLNSILPQDYHGGASLLGKRSMTFSGLDLGGEEGNNGDEDLSDDGSQAGEKKRRLNMEQVKTLEKSFEIGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAIKADNDALQAQNQQLQAEILALKRREVPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPISTHHHHQITSRTLFQSSASNNSAARPSSGGVAQLFQTSSRPELHCHNQKNIDHMVKEESLSNMFCGIDDQTGFWPWLEQQHFN	293

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele54g0833	293	ProSitePatterns	'Homeobox' domain signature.	104	127	IPR017970	GO:0000981\|GO:0006355
	Lele54g0833	293	PRINTS	Lambda-repressor HTH signature	109	125	IPR000047	GO:0003677
	Lele54g0833	293	PRINTS	Lambda-repressor HTH signature	100	109	IPR000047	GO:0003677
	Lele54g0833	293	MobiDBLite	consensus disorder prediction	177	196	-	-
	Lele54g0833	293	MobiDBLite	consensus disorder prediction	50	75	-	-
	Lele54g0833	293	Pfam	Homeobox associated leucine zipper	129	169	IPR003106	GO:0006355\|GO:0043565
	Lele54g0833	293	Coils	Coil	121	169	-	-
	Lele54g0833	293	ProSiteProfiles	'Homeobox' domain profile.	69	129	IPR001356	GO:0003677
	Lele54g0833	293	Pfam	Homeodomain	74	127	IPR001356	GO:0003677
	Lele54g0833	293	FunFam	Homeobox-leucine zipper protein ATHB-13	66	133	-	-
	Lele54g0833	293	Gene3D	-	66	135	-	-
	Lele54g0833	293	SMART	HOX_1	72	133	IPR001356	GO:0003677
	Lele54g0833	293	MobiDBLite	consensus disorder prediction	175	196	-	-
	Lele54g0833	293	MobiDBLite	consensus disorder prediction	223	242	-	-
	Lele54g0833	293	CDD	homeodomain	74	130	IPR001356	GO:0003677
	Lele54g0833	293	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	59	258	IPR045224	GO:0003700
	Lele54g0833	293	SUPERFAMILY	Homeodomain-like	64	131	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele54g0833	Lele-ChrLele54	14981059	14982218	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele54g0833	1	293	Homeobox Transcription Factor Family	AT1G69780	60.396	4.16e-115	332

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele54g0833		Homeodomain	1.1e-15	CL0123