Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0825 ATGGCTGATCTTCAGAAAACGGTTTTTGGCGATAGGAATATCGAACAGGCAATTACATCTCTTAAGAAAGGTGCATATCTACTAAAGTACGGGCGTAGGGGGAAGCCAAAGTTCTGCCCATTTCGGCTTTCCAGTGATGAATCTCAACTCATATGGTATGCTGGAAAGGATGAGAAACAACTAAAGCTCAGTGCTGTTTCAAAAATCATTCCGGGGCAGCGAACTGCCATATTTCAGCGGTATCCTCGGCCTGAAAAGGAGTATCAATCATTTTCACTTATATACAATGATAGGTCCTTGGATTTGATTTGTAAGGACAAGGATGAAGCTGAAACCTGGTTTGCTGGTCTTAAGGCATTAGTTAACCGTGGTAATGATCACAAATGGAGGTATGAATCAAGAAGTGAAAGTGCTGGTTCTGATAGTCCACAGCATCGCGCCCAAAGAAATTCCCCATTTTGTGCACCATTTGACCTGGTGGATACAGAAGAATTTTCTTTTGACAGTACTTCAGAAAATAGATTGGGAAAGGCTTTCTCTGAAATTATTTCATATACTCCAGCTGGCAAGAGTCCCTGTCAAGCTGAATCAAATGCAAATTCCTGTGCATCTCCTGGGTCTGGGGATAACTCAAACAATCGAAATTCTACTGCTGAGCCAATTCGAGTTAGTTTATCCAGTGCTGTAAGTTCATCCAGTCATAGTTCTTATCAAGAAGATTTTGATGCTATAAGAGATGCTTTTATTTTTGGAGAAGGTATTGGTGATGGAATCCTTGGTGGTGGTTTGCATAGACTTGGAACTTCATCTGGTTCTGAGATGGATGCATTTCTCCCCAAGGCATTAGAATCAAAAGTAGTTCTGGATGTTCAGAGTATTGCTTGTGGTTACAAACATGCTGCTCTAGTTACCAAGCAAGGAGAGGTATATAGTTGGGGGGAGGAATCAGGAGGTAGGCTAGGGCATGGTGTAGAAGTGGATGTTTCTCACCCTAAACTCATTGACACTCTTAATGGCATGAATATGGAATTAGTAGCGTGTGGAGAGTATCACACTTGTGCTGTCACATTTTCTGGGGATCTTTATACCTGGGGTGATGGCGTTCACAATTCTGGATTACTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAGAGAGTAAGCGGTAACATGGAAGGCGTACATGTATCCTATGTATCTTGTGGACCTTGGCACACAGCGATTGTAACATCTTCTGGCCAGTTGTTCACATTTGGGGATGGATCTTTTGGTGCCTTAGGTCTAGGAGATCTTAGTAGCACAAATACTCCTAGGGAAGTAGAAACTTTGAAAGGGTTGAGAATAACCAGAGTCTCCTGTGGTGTTTGGCACACTGCTGCTGCTGTTGAGGTGGCAACTGAATCTATGGAATCTTCTAGACACTTACCCATAGGAAAACTATTCACCTGGGGTGATGGGGATAAAGGCCAACTAGGACATGGTGATAGTGAACCTAGAATAGTTCCCCAGTGTGTTATTGCATTGGATAACCAAAATATTTGTCAAGTGGCTTGTGGTCACAGTCTCACTGTTGCTTTGACAGCCTCAGGACATGTATATACAATGGGCAGTACTGCTTATGGGCAACTTGGCAGTCCTGCGGCTGATGGAAAATTCCCTACACGGGTTGAAGGTAAAATTGCTGGTAGTTTCATAGAAGATATTGCCTGTGGTTCAAATCATATTGGAGTACTGACTTCCAAAGCAGAGGTTTACACCTGGGGAAAGGGTTCTAATGGGCAGCTAGGTCATGGAGACAATGGTCACCGAGATACACCTACACTTGTTAAGTTTTTTAAAAATAAGCAAGCGAGGAGTGTTGTTTGTGGTTCAAACTTCACTGCTGTTATATGTCCTCATAAATGGGTATCAAGTGCTGACCAATCTGTGTGTTCTGGTTGTCACAATCCTTTTGGATTCAGAAGAAAACGTCATAATTGTTACAACTGTGGGCTTGTTTTTTGCTCAGCATGCAGCAGTAGAAAATCTACTAAAGCTTCTCTTGCTCCAAATTCAAACAAGCCACATCGTGTTTGCGATGACTGTTATTCTAAACTTAAGAAGACCACGGAATCTGTTTCCTTGACAAAAACTTTTACATTAAAGAATTTGCCCGACTCTTGGGCTGGTAAATTACAGGGAAAACTATTAAGGCTTTCATCTTTTAGCTCTAATGTTCAAGCAGAAAGCAGGCACCCAAAGATCCCAGAACCACATCATAGCCATGTTTTTCCAGCTCTGAATGGAAAACAACAGTTGGGGGGATTCAGTCCTCTAAATGCATCAAATTCTCTTGCTGGAGCATTAGAGAAGCCCCTGTCAGTTTCTGTGCCTGCAAGTGGTTTGAACTCTGAAGTGTCATCTCCAGTTTCAGAAAAGTTGAGCCCACGATGGTCTTCTGAAGATGTCCGTGATGATTCAAAGCATAGAAATAGCATTTTAAGCCAGGAGGTTATAAGTTTAAGGGCACAGGTTGAGGATCTTACTCTTAAATCCAAGCATCTTGAGGCTGAACTGGAGAGGACATCAAAGCAATTAAAGGAAGTGACTGCAGTAGCAGCAGAAGAAGCCGAGAAGTGTAAATCTGCTAAAGAGGTTATAAAGTCACTGACTGCTCAGTTAAAGGACATGGTGCAAAGAGTTCCAGAGGGAGGTATTGCGAACTCTAGTGCAGACTTCTCTGCTGAAATTACCTCTAATGTTCTAAATCAGTCTTTAAATGAGAGCCATATAACAAACAGTATCACTCCTGAAACTGAGTCCAACAGCGATGCAGAAAATGGGGTATTGCCAAGTATTTCCAAAGCACAAAGTGGAAAATCAGAGTGGGTGGTGCAAGATGAACCAGGCGTATACATAAGTTTGTCCTCCTTGCCAGGTGGTGGCAATGAACTTAAACGCGTGCGTTTCAGTCGGAAACATTTCACAGAACAGGAAGCTGAAAAGTGGTGGGCTGAAAATGGGACCAAAGTTTTGGAGCGCCACAATGTAGTTGCTACATAG 3045 0.4256 MADLQKTVFGDRNIEQAITSLKKGAYLLKYGRRGKPKFCPFRLSSDESQLIWYAGKDEKQLKLSAVSKIIPGQRTAIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAETWFAGLKALVNRGNDHKWRYESRSESAGSDSPQHRAQRNSPFCAPFDLVDTEEFSFDSTSENRLGKAFSEIISYTPAGKSPCQAESNANSCASPGSGDNSNNRNSTAEPIRVSLSSAVSSSSHSSYQEDFDAIRDAFIFGEGIGDGILGGGLHRLGTSSGSEMDAFLPKALESKVVLDVQSIACGYKHAALVTKQGEVYSWGEESGGRLGHGVEVDVSHPKLIDTLNGMNMELVACGEYHTCAVTFSGDLYTWGDGVHNSGLLGHGNEVSHWIPKRVSGNMEGVHVSYVSCGPWHTAIVTSSGQLFTFGDGSFGALGLGDLSSTNTPREVETLKGLRITRVSCGVWHTAAAVEVATESMESSRHLPIGKLFTWGDGDKGQLGHGDSEPRIVPQCVIALDNQNICQVACGHSLTVALTASGHVYTMGSTAYGQLGSPAADGKFPTRVEGKIAGSFIEDIACGSNHIGVLTSKAEVYTWGKGSNGQLGHGDNGHRDTPTLVKFFKNKQARSVVCGSNFTAVICPHKWVSSADQSVCSGCHNPFGFRRKRHNCYNCGLVFCSACSSRKSTKASLAPNSNKPHRVCDDCYSKLKKTTESVSLTKTFTLKNLPDSWAGKLQGKLLRLSSFSSNVQAESRHPKIPEPHHSHVFPALNGKQQLGGFSPLNASNSLAGALEKPLSVSVPASGLNSEVSSPVSEKLSPRWSSEDVRDDSKHRNSILSQEVISLRAQVEDLTLKSKHLEAELERTSKQLKEVTAVAAEEAEKCKSAKEVIKSLTAQLKDMVQRVPEGGIANSSADFSAEITSNVLNQSLNESHITNSITPETESNSDAENGVLPSISKAQSGKSEWVVQDEPGVYISLSSLPGGGNELKRVRFSRKHFTEQEAEKWWAENGTKVLERHNVVAT 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0825 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Lele54g0825 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 413 461 IPR000408 -
Lele54g0825 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 358 409 IPR000408 -
Lele54g0825 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 530 577 IPR000408 -
Lele54g0825 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 584 631 IPR000408 -
Lele54g0825 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 479 527 IPR000408 -
Lele54g0825 1014 CDD PH_PLC_plant-like 12 122 - -
Lele54g0825 1014 SMART fyve_4 633 702 IPR000306 GO:0046872
Lele54g0825 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 583 634 IPR000408 -
Lele54g0825 1014 SUPERFAMILY RCC1/BLIP-II 266 636 IPR009091 -
Lele54g0825 1014 Pfam Transcription factor BRX N-terminal domain 869 896 IPR027988 -
Lele54g0825 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 531 582 IPR000408 -
Lele54g0825 1014 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 639 701 IPR017455 -
Lele54g0825 1014 Coils Coil 832 894 - -
Lele54g0825 1014 MobiDBLite consensus disorder prediction 793 809 - -
Lele54g0825 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Lele54g0825 1014 MobiDBLite consensus disorder prediction 793 818 - -
Lele54g0825 1014 CDD FYVE_like_SF 645 697 - -
Lele54g0825 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Lele54g0825 1014 MobiDBLite consensus disorder prediction 190 217 - -
Lele54g0825 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Lele54g0825 1014 SUPERFAMILY FYVE/PHD zinc finger 635 710 IPR011011 -
Lele54g0825 1014 Pfam FYVE zinc finger 635 701 IPR000306 GO:0046872
Lele54g0825 1014 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Lele54g0825 1014 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Lele54g0825 1014 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Lele54g0825 1014 PRINTS Chromosome condensation regulator RCC1 signature 578 599 IPR000408 -
Lele54g0825 1014 PRINTS Chromosome condensation regulator RCC1 signature 520 538 IPR000408 -
Lele54g0825 1014 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Lele54g0825 1014 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 887 - -
Lele54g0825 1014 SUPERFAMILY PH domain-like 14 121 - -
Lele54g0825 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Lele54g0825 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 708 IPR013083 -
Lele54g0825 1014 Gene3D - 184 464 IPR009091 -
Lele54g0825 1014 MobiDBLite consensus disorder prediction 189 217 - -
Lele54g0825 1014 ProSiteProfiles BRX domain profile. 955 1010 IPR013591 -
Lele54g0825 1014 Gene3D - 13 128 IPR011993 -
Lele54g0825 1014 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Lele54g0825 1014 MobiDBLite consensus disorder prediction 132 152 - -
Lele54g0825 1014 FunFam PH, RCC1 and FYVE domains-containing protein 1 216 467 - -
Lele54g0825 1014 Pfam Transcription factor regulating root and shoot growth via Pin3 954 1009 IPR013591 -
Lele54g0825 1014 Gene3D - 472 648 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0825 Lele-ChrLele54 14899234 14905999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0825 953 1011 Major Intrinsic Protein MIP AT1G31880 54.237 4.23e-16 79.3