Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0809 ATGGACTTGACCCCTACCCCCACCGCCTCTGCCGCCACCGCCCACTTTGATTCTCTGCATACTTCAACCTCACCGCCTACCCGCCCCACCAACACCACCAAGTCTCTCTCTTTCACTAACGGCTCCCTCAAGCGCCACCACCCTTTGCCTCATCCACCACCGCCCTCGGTGGTTTCCTACAAGGAATGTCTGAAGAACCACGCCGCCAGCATCGGCGGCCACGCGCTTGACGGTTGTGGCGAGTTCATGCCTTCCTCCGCCTCCTACCCCAGTGACCCACGCACCCTCAAATGCGCCGCGTGTAGCTGCCACCGCAACTTCCATCGCCGTGACCCCCAAGAACTTCCCTCCACCCCCAACTTCTTAAACTGGTTCTATCCGCCGCTGCCGGCTCCTCCTCCGCCGCAGCTTGCTCCCCGAGGGTTTAGCCCGAGCACTAGCCCCAGCTCAAGCCCGAACGGCGCCAGTCCGAGCCCGTTATCAAGCCCATCGCCGCCACCGGTCTCGCATTTCCCTCCTTCCTACCACTCATCGGCACCGCATATGCTGATAGCACTCGGGAACGCTTATTCTGGTCCGTCCGATGAGCAGCAGCATCGGAGCTTCATGAATTCTTCGGCGATGAAGACGACGGAGAAGGATAGCCCAGGTGGGAGAAAGAGATGCAGAACGAAATTCAGCCAAGAACAGAAGGAGAAGATGTTTCAGTTCTCAGAGAAATTGGGTTGGAGAATGCAGAAAGGAGATGATAGAGCGGTCCAAGATTTCTGCAACGAGATTGGGGTTTCAAGAGGAGTATTCAAGGTTTGGATGCACAACAACAAGAACACTTTCAGAAAAAAATCAGAAACTGGGAATACCCAACAAACTGAGAAAATCAATGAACAAGGTGATGATGACTGTGCAGCTGGTGGTCGTCGAGGTGGCGGCGGGTTTGATTGTGATATTAACGACAATAATCACAAGAATGAAGGTAGCTGTATTAATCTTCAAGTCTCTGTTAATGGATCTTCTTCTTGA 1020 0.5402 MDLTPTPTASAATAHFDSLHTSTSPPTRPTNTTKSLSFTNGSLKRHHPLPHPPPPSVVSYKECLKNHAASIGGHALDGCGEFMPSSASYPSDPRTLKCAACSCHRNFHRRDPQELPSTPNFLNWFYPPLPAPPPPQLAPRGFSPSTSPSSSPNGASPSPLSSPSPPPVSHFPPSYHSSAPHMLIALGNAYSGPSDEQQHRSFMNSSAMKTTEKDSPGGRKRCRTKFSQEQKEKMFQFSEKLGWRMQKGDDRAVQDFCNEIGVSRGVFKVWMHNNKNTFRKKSETGNTQQTEKINEQGDDDCAAGGRRGGGGFDCDINDNNHKNEGSCINLQVSVNGSSS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0809 339 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Lele54g0809 339 FunFam Zinc-finger homeodomain protein 2 206 280 - -
Lele54g0809 339 MobiDBLite consensus disorder prediction 1 57 - -
Lele54g0809 339 MobiDBLite consensus disorder prediction 158 173 - -
Lele54g0809 339 MobiDBLite consensus disorder prediction 213 230 - -
Lele54g0809 339 MobiDBLite consensus disorder prediction 1 42 - -
Lele54g0809 339 MobiDBLite consensus disorder prediction 142 157 - -
Lele54g0809 339 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Lele54g0809 339 SUPERFAMILY Homeodomain-like 212 280 IPR009057 -
Lele54g0809 339 MobiDBLite consensus disorder prediction 191 212 - -
Lele54g0809 339 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 277 - -
Lele54g0809 339 MobiDBLite consensus disorder prediction 133 175 - -
Lele54g0809 339 Gene3D - 204 280 - -
Lele54g0809 339 MobiDBLite consensus disorder prediction 188 230 - -
Lele54g0809 339 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 219 276 IPR006455 -
Lele54g0809 339 MobiDBLite consensus disorder prediction 279 304 - -
Lele54g0809 339 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0809 Lele-ChrLele54 14763853 14764872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0809 58 278 ZF-HD Transcription Factor Family AT1G69600 45.291 6.87e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele54g0809 ZF-HD_dimer 2.6e-28 No_clan