Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0805 ATGATCTGTTTCTGTTTTTTCTCTGAACTTGATCTACAATTTTGTCCCTTTAGCTGCCCTGCTGTACCTGTACCTTCCTTCATCCCTTTTCATTCACAACATTTGCGACATGACCATGTTGAAGATTCGAGAGAGAATCCCAAGAGGACAACGAAGCTCGTACATCCCAACGCTGCTATGCAAAAAGAAAGATTCTGCAAAGAATGTGGGAAAGGCTTTTTGTCTCTGAAAGCTCTCTGCGGCCACATGGCTTGTCACTCGGAGAAAGATAAAGCAGGGAAGATGAACAAGTTTGAGAACAATTCTGGGTTTAGCGTGAAGCAGAAAATGGTGATGATGGATGATAGCCAATCGGACACGGAGACTTCTGCTCCGAATTATCCTCGGAGATCCAGAAGAATGAGGTTCAAGACAGTGACTACTGATACAAATGATCATCATGCTTCTTCTGTTCCTTTGACAAATGGTTCTTCCTCTGTGCCAGAGGTGGAGCAAGAAGAAGAGATCGCTAAGTGTTTGATGTTATTGTCCAAAGGCTCCGGCCAAAGGGGTAGTTTTGTTTTGCCTACTGAATCTTCGGACAACAATTCTGCTGTGGCAGAGTTAAAATCACCGTCTGTGGACACTAGAATCACTTTCAAAAATGGTACAAAAAGCTTTGTGTCTAATGGTGTTGAGATCGTGGAGGAGGAGGAGAAGAAGGTGGTGCTGTATAAGAACATGAAGTTGAAGTCTGCTGAGATTTTTTATTCTGATAATTCAGATTCTGGGTATTTCAGAAATGGTCCCAAAAAGTTGGATTTGTATGTTCCGATCGATCATAAGCAGCTCATCAGGAACAGGGAATTCAAAACACCAAAAGTGGAAAGCAGGTCTGGGTTTGAGTTTGATCGGAACTATGATTCTGAATATAGGAAGATGCTGATCAAGAACAGAGGAATTACCAGAAGCATTGAACCCAGAAAACTAATTTTGGAGGATTTGGACTATGATGATACAACAAATGGATTGACAAACGAAGAAGAGTTCATCAATTGGAGAAAGAGACCAAGCTATAATTCAATTGGTGTTCCTTACAAAAAGACACCACCAAATGGTTTTCACAGTGAGGGATCACGGAAGAAGCAAGAGAGCTTAAACAGGGAAAAAATTATCAGTGGCTCTTATGATTCAGCATATGATAATGAGAGTGATGAAATTAGCACAGACACTGATGCTTATTCTGCTCCGATATCTCATAGCAGCAGCAAGGTCATCAATGGAAAGAAGACGAGCCAGTCCAAGACGAAATTGAAGTCAAATAAAACCAGGGAACATAGATGCACTATCTGCTACAGAATTTTTAAGTCAGGCCAAGCTTTAGGAGGTCACAAAAGGTCTCATTTTGTTGGAGGTTCTGAAGAGAACACAATAGTAATCAGACAAGATTCTCCTGTTGTTCCATGCCTAATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG 1485 0.4114 MICFCFFSELDLQFCPFSCPAVPVPSFIPFHSQHLRHDHVEDSRENPKRTTKLVHPNAAMQKERFCKECGKGFLSLKALCGHMACHSEKDKAGKMNKFENNSGFSVKQKMVMMDDSQSDTETSAPNYPRRSRRMRFKTVTTDTNDHHASSVPLTNGSSSVPEVEQEEEIAKCLMLLSKGSGQRGSFVLPTESSDNNSAVAELKSPSVDTRITFKNGTKSFVSNGVEIVEEEEKKVVLYKNMKLKSAEIFYSDNSDSGYFRNGPKKLDLYVPIDHKQLIRNREFKTPKVESRSGFEFDRNYDSEYRKMLIKNRGITRSIEPRKLILEDLDYDDTTNGLTNEEEFINWRKRPSYNSIGVPYKKTPPNGFHSEGSRKKQESLNREKIISGSYDSAYDNESDEISTDTDAYSAPISHSSSKVINGKKTSQSKTKLKSNKTREHRCTICYRIFKSGQALGGHKRSHFVGGSEENTIVIRQDSPVVPCLIDLNLPAPVDD 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0805 494 SMART c2h2final6 439 461 IPR013087 -
Lele54g0805 494 SMART c2h2final6 64 86 IPR013087 -
Lele54g0805 494 ProSitePatterns Zinc finger C2H2 type domain signature. 441 461 IPR013087 -
Lele54g0805 494 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Lele54g0805 494 SUPERFAMILY beta-beta-alpha zinc fingers 65 461 IPR036236 -
Lele54g0805 494 MobiDBLite consensus disorder prediction 357 434 - -
Lele54g0805 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 439 461 IPR013087 -
Lele54g0805 494 Pfam C2H2-type zinc finger 66 88 - -
Lele54g0805 494 Pfam C2H2-type zinc finger 439 461 - -
Lele54g0805 494 MobiDBLite consensus disorder prediction 367 381 - -
Lele54g0805 494 MobiDBLite consensus disorder prediction 402 427 - -
Lele54g0805 494 MobiDBLite consensus disorder prediction 143 160 - -
Lele54g0805 494 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 43 493 - -
Lele54g0805 494 MobiDBLite consensus disorder prediction 140 160 - -
Lele54g0805 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0805 Lele-ChrLele54 14737267 14739081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0805 44 494 C2H2 Transcription Factor Family AT1G26610 36.157 5.34e-55 189