Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele54g0797 | ATGCGCCTCCGTGTTCATCTTCCAGTTCCTTCCACAATCTTCAGTTGGCGCTCACCGTCTGTGTGTTTCCCATTTATCTCTCTTCCTTCTTCCCCACTACTCTCCATAGTTTCTTTCTCTCTCGCCTGCTTTTTGCTGAGGAAGAAGACTATTTTTCATTCTCACTCAATGGCTTCTGAATCCGATATTTCTCAGAATACGTCCCTCTTTGAAAGCTTGTTCAGATTCAGGGAGCTTTCTGTTTTCTTACCCTTCTTCTTAGGCTTCTCCACCGATTCTTCCAGACAAGACAGTCAAGACCCAGATCAGGAAACCACAAATTCAGAAAATAATAGTAATAACAATGGCGAAAGAGTCATCTTGATCAACCCCTTTACGCAAGGCATGGTGGTGATTGACGGTACTTCGAGCCTCGACACTCTGTTCCACGAAATTGGTATGAAAAAGGGGCATCCGCCGGCGTCCAAGGAATCTATAGACGCGATGCCGAGTGTGGAAATCGGAGAAGGAGGCGGCGGCGAGTGTGTGATTTGTTTGGAGGAATGGGAGGTTGGTGGGGTGGCGAAAGAGATGCCTTGTAAGCACAAGTTTCATCAGAATTGTATAGAGAAGTGGTTGGGAATTCGTGGGTCTTGCCCTGTTTGTAGATACCAGATGCCTGTGGCTGAGAAAGAAGTGGGAAAGAGAGATGAAGAAGAACAAGAAGCAGGAGAAGGAGGAGAGAGAAGGAGGGTTGGCAGAGAAATTTGGGTGAGCTTCTCCTTTAGAAGTCAGAATACGAACCAAGCTCCTTCTGATAATTCCAGCGATCCTTCATCAAGTCCAAGAGCTGATTCTGAGGTAGACAATTAG | 852 | 0.4636 | MRLRVHLPVPSTIFSWRSPSVCFPFISLPSSPLLSIVSFSLACFLLRKKTIFHSHSMASESDISQNTSLFESLFRFRELSVFLPFFLGFSTDSSRQDSQDPDQETTNSENNSNNNGERVILINPFTQGMVVIDGTSSLDTLFHEIGMKKGHPPASKESIDAMPSVEIGEGGGGECVICLEEWEVGGVAKEMPCKHKFHQNCIEKWLGIRGSCPVCRYQMPVAEKEVGKRDEEEQEAGEGGERRRVGREIWVSFSFRSQNTNQAPSDNSSDPSSSPRADSEVDN | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele54g0797 | 283 | MobiDBLite | consensus disorder prediction | 255 | 276 | - | - | |
| Lele54g0797 | 283 | MobiDBLite | consensus disorder prediction | 223 | 243 | - | - | |
| Lele54g0797 | 283 | ProSiteProfiles | Zinc finger RING-type profile. | 175 | 216 | IPR001841 | - | |
| Lele54g0797 | 283 | SMART | ring_2 | 175 | 215 | IPR001841 | - | |
| Lele54g0797 | 283 | SUPERFAMILY | RING/U-box | 174 | 221 | - | - | |
| Lele54g0797 | 283 | FunFam | E3 ubiquitin-protein ligase RNF181 | 142 | 222 | - | - | |
| Lele54g0797 | 283 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 222 | IPR013083 | - | |
| Lele54g0797 | 283 | MobiDBLite | consensus disorder prediction | 92 | 117 | - | - | |
| Lele54g0797 | 283 | MobiDBLite | consensus disorder prediction | 255 | 283 | - | - | |
| Lele54g0797 | 283 | Pfam | Ring finger domain | 174 | 216 | IPR001841 | - | |
| Lele54g0797 | 283 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 94 | 220 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele54g0797 | Lele-ChrLele54 | 14684657 | 14685508 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele54g0797 | 57 | 255 | C3H Transcription Factor Family | AT1G26800 | 48.293 | 1.85e-58 | 184 |