Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0790 ATGGTTGGGTTAAGGGTAGTAGTAGTAGTTAACGAGGAAGGTTCCAGGGCATGGCATCAGCCATGTGAAGGCTCTGGGCTTGGAGGTCCCTTTCCTCTGTACTTTGCTTCAACAACAAAGAAGAAAATGGCTCTCATTGGGTTTCTCTTGATGGGTTTTCTGACTTTTCTCTCCATGCTCTCCTCTGCTCATGGCTATGGTGGAGGGTGGATTAATGCTCATGCCACCTTCTATGGAGGTGGAGATGCATCAGGCACAATGGGTGGGGCTTGTGGGTATGGGAATCTGTACAGCCAAGGCTATGGAACGAACACAGCTGCTCTAAGCACGGCTTTGTTCAACAATGGACTGAGCTGTGGGTCATGCTATGAGATCAGGTGTGTGAATGACAGAAGATGGTGCCTTCCAGGTTCCATATTGGTCACGGCTACTAATTTCTGCCCACCAAACAATGCCTTGCCAAATAATGCAGGAGGATGGTGTAACCCTCCTCTCCAACATTTTGATCTTGCGCAGCCTGTCTTCCTCCGCATTGCTCAATACAGAGCTGGCATAGTTCCTGTGTCTTACAGAAGGGTGCCCTGCAGGAGAAGGGGAGGCATAAGGTTTACAATCAATGGGCACTCCTATTTCAACCTGGTCCTCGTCACAAACGTTGGTGGTGCTGGTGATGTACACAGTGTTGCCATCAAAGGGTCAAGAACAAGGTGGATGCCAATGTCAAGAAACTGGGGCCAGAACTGGCAAAGCAACAACTATCTCAATGGCCAAGCCCTCTCCTTCAAGGTCACCACCAGTGATGGCCGCTCTGTAGTGTCCTTCAATGTCGCGCCACCAAACTGGAACTTTGGCCAAACCTTCAAAGGCGCCCAATTCCGCTAG 882 0.5 MVGLRVVVVVNEEGSRAWHQPCEGSGLGGPFPLYFASTTKKKMALIGFLLMGFLTFLSMLSSAHGYGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDRRWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWMPMSRNWGQNWQSNNYLNGQALSFKVTTSDGRSVVSFNVAPPNWNFGQTFKGAQFR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0790 293 PANTHER EXPANSIN-A15 55 292 IPR002963 GO:0009664
Lele54g0790 293 Gene3D - 56 196 IPR036908 -
Lele54g0790 293 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 210 289 IPR007117 -
Lele54g0790 293 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Lele54g0790 293 PRINTS Expansin/Lol pI family signature 275 289 IPR007118 GO:0005576
Lele54g0790 293 PRINTS Expansin/Lol pI family signature 109 127 IPR007118 GO:0005576
Lele54g0790 293 PRINTS Expansin/Lol pI family signature 69 84 IPR007118 GO:0005576
Lele54g0790 293 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Lele54g0790 293 PRINTS Expansin/Lol pI family signature 183 199 IPR007118 GO:0005576
Lele54g0790 293 SUPERFAMILY PHL pollen allergen 197 288 IPR036749 -
Lele54g0790 293 Pfam Expansin C-terminal domain 201 278 IPR007117 -
Lele54g0790 293 SUPERFAMILY Barwin-like endoglucanases 69 218 IPR036908 -
Lele54g0790 293 FunFam Expansin 60 196 - -
Lele54g0790 293 SMART dpbb_1 105 190 IPR007112 -
Lele54g0790 293 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 88 200 IPR007112 -
Lele54g0790 293 Pfam Lytic transglycolase 105 190 IPR009009 -
Lele54g0790 293 FunFam Expansin 200 292 - -
Lele54g0790 293 Gene3D - 200 292 IPR036749 -
Lele54g0790 293 PRINTS Expansin signature 175 188 IPR002963 GO:0009664
Lele54g0790 293 PRINTS Expansin signature 127 138 IPR002963 GO:0009664
Lele54g0790 293 PRINTS Expansin signature 158 175 IPR002963 GO:0009664
Lele54g0790 293 PRINTS Expansin signature 139 149 IPR002963 GO:0009664
Lele54g0790 293 PRINTS Expansin signature 246 267 IPR002963 GO:0009664
Lele54g0790 293 PRINTS Expansin signature 275 291 IPR002963 GO:0009664
Lele54g0790 293 PRINTS Expansin signature 199 211 IPR002963 GO:0009664
Lele54g0790 293 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Lele54g0790 293 PRINTS Expansin signature 100 114 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0790 Lele-ChrLele54 14650348 14653848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0790 43 293 Expansin Gene Family AT2G03090 81.275 4.40e-155 431