Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0785 ATGGTGAAGTCATCGTCGGGCTGCGAGAAACTAGTAGGGTTAAAGAAAGGACCATGGACTCCAGAAGAAGACCAGAAGCTCATGTCCTATATTCAACAACATGGCCATGGAAGCTGGTCTTCCTTGCCTGAAAAAGCTGGACTCCAAAGATGTGGGAAGAGCTGCAGATTGAGATGGATTAATTATCTAAGTCCCGACATCAAAAGAGGCAAGTTCAGCTTACAGGAAGATCAAACCATTATTCAACTTCATGCTTTTCTTGGAAACAAATGGTCGGCCATAGCACATCACTTGCCGAAGAGAACAGACAATGAAATCAAGAATTACTGGAACACCTGCCTTAAGAAGAAGCTCACCAGAATGGGTATAAACCCTAACACCCACAAGCCCATGAACGGCGGCCAGTCGAAGGACTCAGCCAACCTCAGCCATATGGCTCAGTGGGAGACTGCTAGGCTTGAAGCCGAAGCCAGGCAAGTTAAACAATATTCCAAGCTGCAGCTCCTGAACCAGCTCGGCTCCTCCTCCTCTTCCCAGCCTTCGCTCACTCGGCTCGTCCTCAACAAAGTCACACCTCGGCCATTGCCACCTCCGCGCCTCGACGTGCTCAAGGTATGGCAGAATTCATGGCCGTCGTCGACGTCAGAAGATCAGAACACACCTAGAATAATGCATAGCATGTACGCCATGATGCTCGCCACCGACGACCTCGAGTCGCCGGCGTCCACGTTGAGCTTCCCGGACACTGTACCTCCCAACTCCAAATTATGTACTAATGACGAGGACAATATTATGGTGGCGGTGGAAGCATTCAGATCAACTGGTGAGAAGTCAGCATCATCCTATCAGCAAAATTTGGGAGCCTTAAGTGTTGAGGAAGACGGGCAAGATTGGGAAGACATTCTCGACTTGGTCAACGGTTTGCCCCCATCACCTGTTTTCTTCCCTGTGTTGTGA 957 0.4963 MVKSSSGCEKLVGLKKGPWTPEEDQKLMSYIQQHGHGSWSSLPEKAGLQRCGKSCRLRWINYLSPDIKRGKFSLQEDQTIIQLHAFLGNKWSAIAHHLPKRTDNEIKNYWNTCLKKKLTRMGINPNTHKPMNGGQSKDSANLSHMAQWETARLEAEARQVKQYSKLQLLNQLGSSSSSQPSLTRLVLNKVTPRPLPPPRLDVLKVWQNSWPSSTSEDQNTPRIMHSMYAMMLATDDLESPASTLSFPDTVPPNSKLCTNDEDNIMVAVEAFRSTGEKSASSYQQNLGALSVEEDGQDWEDILDLVNGLPPSPVFFPVL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0785 318 Gene3D - 71 144 - -
Lele54g0785 318 SMART sant 68 116 IPR001005 -
Lele54g0785 318 SMART sant 15 65 IPR001005 -
Lele54g0785 318 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lele54g0785 318 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Lele54g0785 318 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lele54g0785 318 Gene3D - 15 68 - -
Lele54g0785 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lele54g0785 318 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lele54g0785 318 CDD SANT 18 63 IPR001005 -
Lele54g0785 318 FunFam MYB transcription factor 70 131 - -
Lele54g0785 318 FunFam MYB-related transcription factor 15 68 - -
Lele54g0785 318 ProSiteProfiles Myb-like domain profile. 14 63 IPR001005 -
Lele54g0785 318 CDD SANT 71 112 IPR001005 -
Lele54g0785 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lele54g0785 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0785 Lele-ChrLele54 14605938 14607417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0785 5 180 MYB Transcription Factor Family AT5G15310 71.978 9.90e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g0785 Myb_DNA-binding 8.3e-16 CL0123