Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0748 ATGGAGGAGAGGAAGTTCGTATGCAAGTATTGCAACAAGAAGTACCCATGTGGGAAGTCTCTGGGTGGACACATCAAGACTCATATGAATACTGAAAGTTATTCATCGTCTAAATCCAAGGAAGGTAGAACCAATGCCGATGATTGTGTTTTCAAGTTCGATGGTGGAAGGAAGAGGAAGAGAGATTTTGGGTCTGAAGAAGAAGCTGCTTCTGGAAACCCCATTTATTATGGTCTTCGAGAGAATCCCAAGAAAACAACGAGGTTCGTACATTCTTCCAACGTTGTTGTCGCACAACAAGAGAGGTTCTGCAAAGACTGTGGGAAAAGATTTCTGTCTCTGAAAGCTCTCTGCGGCCACATGGCTTGCCATTCGGAGAAAGATAAAGGAATGATGATGATGACGAACAAATTTGAGAACAATTCTGGGTTTATTAGCATGAAGCAGCAGAAACTGGTGGTGGATAGCCAATCGGACACTGACACATCTGCTCCGAATCATCCTAGGAGATCCAGAAGAATGAGGTTCAAGACCGTGAATACTGATAATAAAATCGATCACCCTTGTTTTGTTTCTATGGCGAATGGTTCTTCCTCTGTGTCTGAGGTGGAGCAGGAACAAGAAGAGATCGCTAGGTGTTTGATGTTATTGTCCAAAGACTCTAACCATAGGGGTCGTTTTGTTTTGCCCACTGAATCTTCAGACAACAATTCTGTCGTGGTAGAGGCAAAATCACCGGCTGTGGACACGATTATTACTCTCAACAACGGTAAAAAAGACTCTGTGTCTAATGGTTTTGAGATCGTGAAGGAGAAGAAGAAGAAGAAGGTGGTGCAGTATAATAATAGCATGAAGTTGAAGTCTACGGAGATTGTCGATTCTGATAATTCAGATTCTGGGTATTTCAGAAATGGTCCCAAAAAGTTTGATTTTTCAATTGATGGGTATCATAGGAATGGGGAATTCAAGACACCAAAAGTGGAAATCAGGTCTGGGTGTGAGTTTGATCAGAACTATGATGCTGAATTGAGGAAGAAGATGCTGATCAAGAACAGAGGAAGAACCAGAAGCACTGAACCCAGAAAGCTAATTTTGGAGGATTTGGACTACAATACAACAAACGGTTCTGCAAGGGAAGAAGAGTTCATCAATTGGAGAAAGAGACCAAGATATGATTCTCTTTGCCAAAACAATTCAGTTGGCGTTTCTTGCAAAAGGACACAAAATGGTTTTCACAATGAGGGGTCATTGAAGCCAGAGAGCTTAAACAGGAAAAAAATTATCAATAATGACTCTCAGGATTCAGCAGACGAGAGTGATGAAAGCAGCACAGACACTGATGCTTATACTGCTCCGAGATCTCATAGCAGCAAGGTCATCAATGGAAACAAGATCACCAAGTTCAAGAAGAAATTGAAGTCAAAGAAAAGTAGGGACCATGAATGCCCAATCTGCTACAAAAAGTTTAAGTCAGGCCAAGCATTAGGAGGTCACAAAAGGTCTCATTCTGTTGGAGGTTCTGAAGAGAACACAGTGGTGATCAAACAAGGCCCTCCTCTGGTTCCATGCTTGGTTGATCTCAATCTTCCTGCTCCTGTTGATGATTAG 1608 0.4198 MEERKFVCKYCNKKYPCGKSLGGHIKTHMNTESYSSSKSKEGRTNADDCVFKFDGGRKRKRDFGSEEEAASGNPIYYGLRENPKKTTRFVHSSNVVVAQQERFCKDCGKRFLSLKALCGHMACHSEKDKGMMMMTNKFENNSGFISMKQQKLVVDSQSDTDTSAPNHPRRSRRMRFKTVNTDNKIDHPCFVSMANGSSSVSEVEQEQEEIARCLMLLSKDSNHRGRFVLPTESSDNNSVVVEAKSPAVDTIITLNNGKKDSVSNGFEIVKEKKKKKVVQYNNSMKLKSTEIVDSDNSDSGYFRNGPKKFDFSIDGYHRNGEFKTPKVEIRSGCEFDQNYDAELRKKMLIKNRGRTRSTEPRKLILEDLDYNTTNGSAREEEFINWRKRPRYDSLCQNNSVGVSCKRTQNGFHNEGSLKPESLNRKKIINNDSQDSADESDESSTDTDAYTAPRSHSSKVINGNKITKFKKKLKSKKSRDHECPICYKKFKSGQALGGHKRSHSVGGSEENTVVIKQGPPLVPCLVDLNLPAPVDD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0748 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Lele54g0748 535 Pfam C2H2-type zinc finger 6 29 - -
Lele54g0748 535 Pfam C2H2-type zinc finger 480 502 - -
Lele54g0748 535 Pfam C2H2-type zinc finger 104 126 - -
Lele54g0748 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lele54g0748 535 MobiDBLite consensus disorder prediction 431 458 - -
Lele54g0748 535 ProSitePatterns Zinc finger C2H2 type domain signature. 482 502 IPR013087 -
Lele54g0748 535 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele54g0748 535 SMART c2h2final6 480 502 IPR013087 -
Lele54g0748 535 SMART c2h2final6 102 124 IPR013087 -
Lele54g0748 535 SMART c2h2final6 6 28 IPR013087 -
Lele54g0748 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 480 503 IPR013087 -
Lele54g0748 535 SUPERFAMILY beta-beta-alpha zinc fingers 2 34 IPR036236 -
Lele54g0748 535 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Lele54g0748 535 SUPERFAMILY beta-beta-alpha zinc fingers 103 502 IPR036236 -
Lele54g0748 535 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0748 Lele-ChrLele54 14381242 14382849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0748 1 535 C2H2 Transcription Factor Family AT1G26610 36.299 9.24e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele54g0748 zf-C2H2_6 2.7e-10 CL0361