Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0747 ATGGTGAAGATTTGTTGCATCGGAGCTGGATATGTGGGTGGACCCACAATGGCTGTGATTGCCTTGAAATGTCCCGAGATCCAAGTAGCTGTCGTGGATATCGCCGCCCCAAGAATCAATGCCTGGAACAGTGACCACCTCCCAATCTACGAGCCTGGCCTCGAAGAAGTGGTGAAGGAGTGCAGGGGAAGGAATCTTTTCTTTAGCACTGATGTGGAGAAGCATGTGGCAGAGGCTGATATAGTGTTCGTCTCCGTAAACACCCCAACAAAAACTCAAGGACTTGGAGCTGGCAAAGCAGCTGATCTCACCTATTGGGAGAGTGCTGCAAGAATGATCGCTGATGTTTCCAAATCTAACAAAATTGTTGTCGAGAAATCAACTGTTCCTGTGAAAACAGCTGAGGCAATTGAGAAGATCCTGACCCACAATAGGAAAGGAATCAATTTCACGATTCTGTCAAACCCAGAATTTCTCGCTGAGGGTACAGCAATTAAGGACCTAATGAGTCCTGATCGAGTCCTTATTGGAGGTAGGGAGACCCCAGAAGGTGCTAAGGCCATACAAACTTTGGAAGATGTTTATGCCCATTGGGTCCCCGTAGACAAAATCCTCTGCACCAACTTGTGGTCTGCTGAACTCTCAAAGCTTGCTGCCAATGCTTTTCTGGCACAAAGGATCTCTTCTGTGAATGCCATGTCAGCACTCTGTGAGGCAACTGGAGCTGATGTCACCCAGGTGTCACACGCAATTGGCACAGACTCAAGAATTGGACCCAAGTTTTTGAATTCAAGCGTTGGTTTTGGTGGATCTTGCTTTCAGAAGGATATTCTGAACTTGGTCTATATCTGTGAATGCAATGGCCTTCCTGAGGTTGCAAATTACTGGAAACAGGTGATTAAGGTGAATGACTACCAGAAAACTCGGTTTGTGAACCGAGTTGTTTCCTCCATGTTTAACACTGTATCAGGTAAGAAAATTGCTGTTCTGGGCTTTGCTTTCAAGAAGGACACCGGGGATACAAGGGAGACACCAGCTATTGATGTGTGCAAAGGGCTATTGGGAGACCAGGCTCGTTTGAGCATATATGATCCACAGGTAACTGAAGATCAAATTACAAGGGATCTCTCAATGAATAAGTTTGATTGGGACCATCCTGCTCATCTGCAACCATCAAACCCAACTTCCATTAAGACAGTGTCTGTGGTTAGGGATGCCTATGAGGCAACAAAAGAGGCTCATGCTGTTTGCATTCTGACCGAGTGGGATGAGTTCAAGAAGCTTGATTACCAAAAATTTGTTGATAATCTAGGATTTTGGGTTTCCCCTTTGACCTTAATCTGCCCTCCCAAGTGCTGCGTTGACGCTTTGTCATCATTGTATTTGAAGGACTTGACAAGAATTAGAATGGGATTTAAACGGTGTTTTGAGGCCAATGCTTTTGAGGATCTTCCTTTCAATAAGGCAAAACGTTTGGAGTGCAATGATAAGTTGGTTTCGTTTGCTGGTACTGATACCCCCAACAATGCTTCGGTGAAGCCTATTGCTTCAGGGAAAGATGAGGATGGCTTTTACAATATTCAATGGTATGACGCAATAGAACCAGAAACTGTCACTGGAGCTGCACATGCTGGTGAGAAGGATATTGAGACCAGTGGCCACTTCAGTAGCAGTTATAGTGAGGATGGTTCTGGGGCAACATCATTGTCTGCTTCTTTAGATTCCTTGGAATTTGATTTTCCACAGAAAGCAAGGGTTCCTTTGGATGATGCCTATTCAGTTCTTGAGAACTTCCAGAGAAAACAAGTTCCTGTTGGACCAAATCATCAAGCCACCATTCCAGTCTGGCAGGGAAGAGGGAGTGAGGTATCAGTGTTGATAGGCACCTATGATGTTGGTGGCAATGAAGAGAAGTTTATGGGGACTTCTGTGATCTCAATGCCCAACTCGAGCTTATATTCTTGTAATAGTCACAAGGATGAAAAAGGCAGAACAGAATGTAACTTCCTGGATCAAGATTCCATCAGATGTGTTCGACAGTGTGTTCGGGAAGCACGTGAAAACTTGATGAATACTCTTGGAAATGAGATGTTTATCAACTTGGGGTTTGATCACATGGGAGAGGAGGTTGCACTCAAATGGAGTGAAGAAGAAGAAGATTTATTTCATGAAGTTGTCTACACAAATCCTGCAACATTGGGTAGAAACTTTTGGAAGGAGCTGTCAGCTGCATTCCCTTCTCGAACAAAGAAGGAAATTGTCAGCTATTATTACAATGTCTTTATGCTTCGGAGAAGGGAAGCTCAGAACAGATCAAGATTTCTCAATATTGACAGTGATGATGATGAATGTCCCACAAGCAATAATGTGGGCTTCTATGGTTTTGAAGTATCAGAAGAAGACTCTGCCATTGAGTCTCCTGATGATCAAGATGTCCATGAGGGAAACCAAGATAATTATTCTGATGATGATGGTGAAGATGACAACAGCGACAATGGAACTGATGGTGGTTTTGTTGGTATTGGCAGGTATGACAAGGCAAATGGCAGTGACTCCAACTCTCAGATTGAGAGCTTGTCTGAACATGTACACCAAGACAATGAGACCCTGGGAATTTCAATTGGTTCAGGTGTTCAGGATGATTCCTGCATGTCCTTTGAGGGTCAGATCAATATGGATGAGCCCTGCCCCCAATATGGGCATGATGATGCTAGTCCTGCTTTGCATGCTAGTGGATTTAAATGTGACCAAAGCCCACTCATACCGGGCATACTTGATTTCTCCAGTGGTACTATGGAGCATATTTATTTTTCAGAGCCTTGTGATGCTAAAGATTGGTACCCAGGGTATTTTACAAATGCAGCCTCTGATATCGACTTCTCGTCCACATCCAAATTAATTGAAGAGTTTCTGGGTCAAGTTACTCCAGATCGAAAGAACAAAAATGACTGA 2952 0.439 MVKICCIGAGYVGGPTMAVIALKCPEIQVAVVDIAAPRINAWNSDHLPIYEPGLEEVVKECRGRNLFFSTDVEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSNKIVVEKSTVPVKTAEAIEKILTHNRKGINFTILSNPEFLAEGTAIKDLMSPDRVLIGGRETPEGAKAIQTLEDVYAHWVPVDKILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDQARLSIYDPQVTEDQITRDLSMNKFDWDHPAHLQPSNPTSIKTVSVVRDAYEATKEAHAVCILTEWDEFKKLDYQKFVDNLGFWVSPLTLICPPKCCVDALSSLYLKDLTRIRMGFKRCFEANAFEDLPFNKAKRLECNDKLVSFAGTDTPNNASVKPIASGKDEDGFYNIQWYDAIEPETVTGAAHAGEKDIETSGHFSSSYSEDGSGATSLSASLDSLEFDFPQKARVPLDDAYSVLENFQRKQVPVGPNHQATIPVWQGRGSEVSVLIGTYDVGGNEEKFMGTSVISMPNSSLYSCNSHKDEKGRTECNFLDQDSIRCVRQCVREARENLMNTLGNEMFINLGFDHMGEEVALKWSEEEEDLFHEVVYTNPATLGRNFWKELSAAFPSRTKKEIVSYYYNVFMLRRREAQNRSRFLNIDSDDDECPTSNNVGFYGFEVSEEDSAIESPDDQDVHEGNQDNYSDDDGEDDNSDNGTDGGFVGIGRYDKANGSDSNSQIESLSEHVHQDNETLGISIGSGVQDDSCMSFEGQINMDEPCPQYGHDDASPALHASGFKCDQSPLIPGILDFSSGTMEHIYFSEPCDAKDWYPGYFTNAASDIDFSSTSKLIEEFLGQVTPDRKNKND 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0747 983 Pfam Myb-like DNA-binding domain 713 760 IPR001005 -
Lele54g0747 983 PIRSF UDPglc_DH_euk 1 440 IPR028356 GO:0003979
Lele54g0747 983 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 200 IPR036291 -
Lele54g0747 983 MobiDBLite consensus disorder prediction 847 863 - -
Lele54g0747 983 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Lele54g0747 983 SUPERFAMILY Homeodomain-like 713 761 IPR009057 -
Lele54g0747 983 MobiDBLite consensus disorder prediction 799 863 - -
Lele54g0747 983 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 431 IPR036220 -
Lele54g0747 983 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Lele54g0747 983 CDD SANT 713 761 IPR001005 -
Lele54g0747 983 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Lele54g0747 983 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 436 IPR028356 GO:0003979
Lele54g0747 983 PIRSF UDPglc_GDPman_dh 2 449 IPR017476 GO:0016616
Lele54g0747 983 SMART UDPG_MGDP_dh_C_a_2_a 328 450 IPR014027 GO:0016616|GO:0051287
Lele54g0747 983 Gene3D - 714 775 - -
Lele54g0747 983 ProSiteProfiles Myb-like domain profile. 713 761 IPR001005 -
Lele54g0747 983 Gene3D - 1 208 - -
Lele54g0747 983 Gene3D - 209 240 - -
Lele54g0747 983 SMART sant 710 763 IPR001005 -
Lele54g0747 983 FunFam UDP-glucose 6-dehydrogenase 1 208 - -
Lele54g0747 983 Gene3D - 241 441 - -
Lele54g0747 983 FunFam UDP-glucose 6-dehydrogenase 241 439 - -
Lele54g0747 983 FunFam UDP-glucose 6-dehydrogenase 209 240 - -
Lele54g0747 983 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 436 IPR014027 GO:0016616|GO:0051287
Lele54g0747 983 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 433 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0747 Lele-ChrLele54 14366683 14372869 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele54g0747 UDPG_MGDP_dh_N 2.3e-65 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0747 54 14366683 14372869 Lele55g0732 55 4890476 4891918 hybridization
Lele54g0747 54 14366683 14372869 Lele56g0686 56 5131822 5138077 hybridization