Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0742 ATGGCGTCGCAAATGGCGATCATTGCTCGGACGCGTTCTCTGATCAAAACGCTTCACTCTAACTACGCTAACACATCCGTTAAGACGATTGCCACCTTCCCTTCCCTCTCTCAGGAGCCTCAACTCGCCGAATCTCCTGCACCGGCCGCCCCAACTCCACTTCCTCCCAACCCGGCCTCCGGTAGTCCTCTCTACAATGAGAATTGGCGCAGCCCAATTCCGCCTTCTGCAACCCAGTCAATGATCCCCCTGGGGTTCCTTAATCTAGTACCCGGTCATCGCATCCAAAAAATGGCTCAGACATTTGATGTTAAGAGCTTGATGGATCAGTTTGCTGATTGGGTGGCCTCTCAGGAATGGGCTGCTATCAAAGAGTTGTTCGAGTCTTGGGTTAAGTCATTGGACAAGAGTGGGAAGCCGAATAAGCCTGATGTGAATTTGTATAATCATTATCTGAGAGCGAACTTGATGATTGGTTCTTCTGCTGGGGAGCTACTTGATTTCTTAGCTGGAATGGAGGATTTTGGTGTCACACCTAATACTGCTTCGTTCAATTTGGTGCTTAAAGCAATGTACCACGCCAAGGAGACTGAAGCTGCTGAGAAGTTGCTGGAACGGATGCTGCTGACTGGAAATGAATCTCGCCCTGATAATGAATCTTATGACTTGGTCATTGGAATGCTGTTTTTGACTGGCCAAATTGATGCTGCATTGAAGTATATAGATTTGGCTTTGAAATCAAGTTATATGCTGTCAATGAAAGTGTTTACAAACTGTGTAAATAGTTGTATCAAAAGGGGTAGGCTAGATACTTTGGCAGCAATAATTGAAAAGTGCAAGACAATGGATCAGAACAAGGCCCTTTGCCCTCCGTGGAATGTGTGCTACTTAATAGCTGAAACTGCAATGCAGCTGGATAATAGCAAGCTAGCTTATTATGCCCTGGAGTTTATGGCTATGTGGATTGCAAGGGGTGAGCAGGCAAGACCAGCTGCATTTCTTTCTGTGGATGAAGGTTTAGTTGTGTCAGCTCTAGCCACTGCAGGTAGGACCTATAGTTCTAATCTGCTAGATGCTGCATGGACTATTTTACGTCGCTCATTGCGTCAGAGAAAGGCTCCTAACCCTGAATCTTATCTCGGAAAGATAAGTGCCCTTGCATCAATGGGGAACTTACAAAGGGCTTTTAGTACGCTACATGACTTTGAGGTTGCTTATGGAGATTCCAGTCAAGAAACTGAAGAAATGTTCTCTCCCTTTACTTCTTTACATCCATTGGTTTTGGCATGCTGCAACAAGGGATTTGAGACTTTGGATTCTGTTTATTTTCAACTGGAAAGTTTGAGTCGAGCAGAGAAGCCTTATAAATCTGTTGCTGCTCTAAACTGCATCATTTTAGGGTGTGCAAACATATGGGACCTCGATCGTGCGTACCAAACTTTTGAAGCAATTGGATCCTCTTTTGGATTGACACCTGATATTCATTCATATAACGCGCTGATGCATGCATTTGGGAAGCTCAAAAAGACACATGAAGCAACTAAGGTGTTTGAGCACGTAGTGAGCTCGGGTGTAAAGCCTAATGCAATGTCATATTCTCTGCTCGTGGATGCCCACCTCATGAACCGAAATGTCAAAGACGCTCTAACTGTAATTGATGATATGGTGGCTGCTGGATTTGACCCTACAAAAGAGATGCTAAAAAAGGTTCGAAGGCGATGCATGCGAGAGATGGACTATGACAGTGATGATAGAGTTCAGTCCTTTGCCAAATCTCTGAACATTCGAATGGGTCCAGAAGGCCGTCGGGACATGCTATTCAATCTCGATTACAGCATGGATTATGCTTAA 1851 0.4479 MASQMAIIARTRSLIKTLHSNYANTSVKTIATFPSLSQEPQLAESPAPAAPTPLPPNPASGSPLYNENWRSPIPPSATQSMIPLGFLNLVPGHRIQKMAQTFDVKSLMDQFADWVASQEWAAIKELFESWVKSLDKSGKPNKPDVNLYNHYLRANLMIGSSAGELLDFLAGMEDFGVTPNTASFNLVLKAMYHAKETEAAEKLLERMLLTGNESRPDNESYDLVIGMLFLTGQIDAALKYIDLALKSSYMLSMKVFTNCVNSCIKRGRLDTLAAIIEKCKTMDQNKALCPPWNVCYLIAETAMQLDNSKLAYYALEFMAMWIARGEQARPAAFLSVDEGLVVSALATAGRTYSSNLLDAAWTILRRSLRQRKAPNPESYLGKISALASMGNLQRAFSTLHDFEVAYGDSSQETEEMFSPFTSLHPLVLACCNKGFETLDSVYFQLESLSRAEKPYKSVAALNCIILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALMHAFGKLKKTHEATKVFEHVVSSGVKPNAMSYSLLVDAHLMNRNVKDALTVIDDMVAAGFDPTKEMLKKVRRRCMREMDYDSDDRVQSFAKSLNIRMGPEGRRDMLFNLDYSMDYA 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0742 616 PANTHER OS07G0599000 PROTEIN 1 615 IPR044605 -
Lele54g0742 616 MobiDBLite consensus disorder prediction 46 60 - -
Lele54g0742 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Lele54g0742 616 Pfam Pentatricopeptide repeat domain 142 191 IPR002885 -
Lele54g0742 616 TIGRFAM PPR: pentatricopeptide repeat domain 531 563 IPR002885 -
Lele54g0742 616 TIGRFAM PPR: pentatricopeptide repeat domain 495 529 IPR002885 -
Lele54g0742 616 Gene3D Tetratricopeptide repeat domain 113 310 IPR011990 GO:0005515
Lele54g0742 616 Gene3D Tetratricopeptide repeat domain 418 601 IPR011990 GO:0005515
Lele54g0742 616 MobiDBLite consensus disorder prediction 38 70 - -
Lele54g0742 616 Pfam PPR repeat family 492 538 IPR002885 -
Lele54g0742 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0742 Lele-ChrLele54 14330379 14333866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0742 490 582 Glycosyltransferase AT1G05670 26.882 1.25e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0742 54 14330379 14333866 Lele55g0737 55 4936387 4939563 hybridization
Lele54g0742 54 14330379 14333866 Lele56g0691 56 5169321 5172802 hybridization