Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0672 ATGAAAAGAGAGGAAGATTATGGGCAGTGTTCTTCACAGGCCATAAACAACTTTCACAGCTATCAAGAGCAGTTACTTCTGCAACAGATGCATCAGCAACAGAACACTATGTTCCCAGAAGTTTCTCCGTGGAATATCCCTCCGGTTCATCACTCCTTCAACCAGCCGGTTCATCATCATCATCACTTTTCCAATCCGGTCCGAGTCGACGACCACCATGACCCGTTTCTTCATCTTCCTCCTCCACCTCCTCCAGCTGCTGGGCCCTATGCTAGTTTGTTTAACAGGAGGGTTCCTTCTCTGCAGTTTGCGTACGACGGTTCACCTTCCGACCATCTCCGGCTCTTATCTGAGGCTCTTGGACCCATGGTTCAACCCGGTTCAGCCCCATTCGGCCTCCAAGCCGAGCTGGGCAAGATGACAGCTCAAGAAATCATGGACGCTAAGGCTCTTGCAGCGTCCAAGAGTCACAGTGAAGCTGAAAGAAGACGCAGAGAAAGAATCAATAACCATCTTGCCAAACTTCGCGGCTTATTGCCCAGCACAACCAAAACGGATAAAGCATCGTTGCTGGCGGAAGTGATTCAGCATGTGAAGGAACTGAAGAGGCAGACGTCGTTGATAGCGGAAACAAGTCCGGTGCCGACGGAGGTGGATGAGCTGACGGTGGACACTGCCGACGAGGATGACGACGGGAAGTTTGTGATCAAAGCGTCTTTCTGCTGTGAGGATCGGTCAGATCTGTTGCCGGAACTGATAAAGACATTGAAAGCAATGAAGCTAAGAACCCTGAAAGCAGAGATCACCACAATTGGTGGACGTGTGAAGAATGTGTTGTTCATTACCGGGGAAGAAGATGGAGATTCTCAGAGCAGTGGCGAGCTTCATCATCATAATCATCAGAACCAGATGTTGCAGCAACAACAATATTGTATCAACTCAATACAAGAAGCTCTTAGGGCAGTGATGGAGAAGAGTAATGGTGGGGATGAGACAGCAAGTGGGGCTGTTAAGAGACAAAGGACTAGTAACCTTAATATCCTCGACCACAGAGAGAGGAGGGTGCTTGTGGGATCAAGTTTCAAGCTTTGTGATTGGGTCTGCAAGTCTCGGAGCTTAGGTGCAATTTTGGAGGGCATATGA 1143 0.4899 MKREEDYGQCSSQAINNFHSYQEQLLLQQMHQQQNTMFPEVSPWNIPPVHHSFNQPVHHHHHFSNPVRVDDHHDPFLHLPPPPPPAAGPYASLFNRRVPSLQFAYDGSPSDHLRLLSEALGPMVQPGSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRGLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEVDELTVDTADEDDDGKFVIKASFCCEDRSDLLPELIKTLKAMKLRTLKAEITTIGGRVKNVLFITGEEDGDSQSSGELHHHNHQNQMLQQQQYCINSIQEALRAVMEKSNGGDETASGAVKRQRTSNLNILDHRERRVLVGSSFKLCDWVCKSRSLGAILEGI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0672 380 FunFam transcription factor bHLH30 147 210 - -
Lele54g0672 380 CDD bHLH_AtAIG1_like 147 224 - -
Lele54g0672 380 Pfam Helix-loop-helix DNA-binding domain 155 201 IPR011598 GO:0046983
Lele54g0672 380 PANTHER TRANSCRIPTION FACTOR BHLH30 34 346 IPR045847 GO:0003700|GO:0006355
Lele54g0672 380 Gene3D - 147 208 IPR036638 GO:0046983
Lele54g0672 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Lele54g0672 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 208 IPR036638 GO:0046983
Lele54g0672 380 SMART finulus 158 207 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0672 Lele-ChrLele54 13668141 13670616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0672 11 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 52.561 9.71e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele54g0672 HLH 3.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0672 54 13668141 13670616 Lele55g0826 55 5631423 5633142 hybridization
Lele54g0672 54 13668141 13670616 Lele56g0768 56 5822756 5825532 hybridization