Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0664 ATGGGTCCCCCAGCCTTTAAAATCGTCCTGAGCGGTGTGGAGGAGAGGAGAAGAGAAGAGCTGAAGAAGATGGTTGATGTCTTGCTCAAACCCCACCTGATGTTGGGGTTCTCCGATTATATTCAAGCATTAGAATCTGAAAGCCGTAAAATCCGCGTCTTCTCCAAAGAGCTTCCTCTTTCCTTGGAGCTCGTTACCCAAGCCATTGAAGCCTGTAGACTACAGCTGCGTGGAAGGACGACGTCGGAGGAGCAGAATTTGAACCGGCAATCAGAGTGTTCATCAGGACAGACATCATCGGAAGGACCTGTTTTGGAGGAGTTCATACCTCTAAAGAAAAGACCATCCTCGGATTGTGGGGAAGAAGACGAAGAAGGAAATGAGCAACACTCGCATAAACCCAAGATTGCCAAGGATAATAATAACAACACTGATAAGAAAAAATCAGATTGGCTTAGATCCGTACAACTCTGGAATCCACAATCCCCAGTTAAAGAGGGTATTCCTAGGAAAACGTCGGTGTCGGAATTAAACAGAGACGGTGGTGCTTTCCGGCCATTCCACAGAGAAGCTAGTGTAGGAAAAGCTACCGTTTTAACAGCCAAAGCATCATCTTCGCCGGTGCAGACGCCTCCTGTCGCCGGAAGCAACAAGAGAGAAGAGAAAGAAGGACATAATAATAAAAGGAATAAGCAACGACGGTGCTGGTCTCAGGAGCTGCATAAGCGCTTCGTGAACGCCCTCCAGCAACTTGGTGGAGCAGATTCTGCAACACCGAAGCAGATAAGGGAACTTATGAAGGTTGATGGATTAACAAATGATGAAGTGAAGAGTCATTTACAGAAATTTCGATTGCACACGAAGAGGCCAAGCCCATTGATTCAGAACAATAATGGTGATTCACAAGCGGCTCCATTTGTAATCGTGGGGAACTTTATAGTGGGACCGCCGGAACATGCGGCGGCGGTGCCTGGGATTTATGCTCCGGTGACGTCGGATGCAGCTGCGGTGGCACGGGCGGCGGTTCCGACGAAGGGTCAGGGAAGGCAATTACGTTCAAATTCAGAAGACAGCGAAGTGGCGGATCATACAAATTCACCAACTTTGTCTTCCTCAACACATACCACCACAGCTTCCCCTCGTTATTAA 1149 0.4813 MGPPAFKIVLSGVEERRREELKKMVDVLLKPHLMLGFSDYIQALESESRKIRVFSKELPLSLELVTQAIEACRLQLRGRTTSEEQNLNRQSECSSGQTSSEGPVLEEFIPLKKRPSSDCGEEDEEGNEQHSHKPKIAKDNNNNTDKKKSDWLRSVQLWNPQSPVKEGIPRKTSVSELNRDGGAFRPFHREASVGKATVLTAKASSSPVQTPPVAGSNKREEKEGHNNKRNKQRRCWSQELHKRFVNALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTKRPSPLIQNNNGDSQAAPFVIVGNFIVGPPEHAAAVPGIYAPVTSDAAAVARAAVPTKGQGRQLRSNSEDSEVADHTNSPTLSSSTHTTTASPRY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0664 382 Gene3D - 230 288 - -
Lele54g0664 382 FunFam Myb family transcription factor 230 288 - -
Lele54g0664 382 MobiDBLite consensus disorder prediction 81 102 - -
Lele54g0664 382 MobiDBLite consensus disorder prediction 198 213 - -
Lele54g0664 382 MobiDBLite consensus disorder prediction 81 233 - -
Lele54g0664 382 MobiDBLite consensus disorder prediction 107 152 - -
Lele54g0664 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 228 288 IPR017930 -
Lele54g0664 382 Pfam Myb-like DNA-binding domain 233 282 IPR001005 -
Lele54g0664 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 37 361 IPR044787 GO:0003700|GO:0006355
Lele54g0664 382 MobiDBLite consensus disorder prediction 216 233 - -
Lele54g0664 382 MobiDBLite consensus disorder prediction 341 382 - -
Lele54g0664 382 MobiDBLite consensus disorder prediction 347 382 - -
Lele54g0664 382 SUPERFAMILY Homeodomain-like 230 289 IPR009057 -
Lele54g0664 382 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 231 286 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0664 Lele-ChrLele54 13564508 13568969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0664 34 330 G2-like Transcription Factor Family AT1G68670 46.130 1.42e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele54g0664 Myb_DNA-binding 2.1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0664 54 13564508 13568969 Lele55g0835 55 5742554 5744033 hybridization
Lele54g0664 54 13564508 13568969 Lele56g0777 56 5918103 5919596 hybridization