Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0660 ATGGAGTATCCCTCGTTTTCATCCTCCTCCAATTCCGGTACCATCGCTACCAGTGATCAGAATGCGGAGCGAAGTCGGAGAAGTGGCGATGCCCATGAAGCTGTGACCTTTGAGCACTCGCGTCGGTGGCATGATGTTTTCTGGTCCGGAATATTTATAATTCATTTGCTTTTTCCTGCCCTCATTTTGGGGGTTCTCGGTCTCGATAGGTTCCAGGAAAGGGATAGACTTAAGATTGGTATCTACACCGGACCTCTTCACCATCACATGGATTCATCGAGGATTACTGGCCGCTTTATGCTGTTACTGGCCGCTTCACGCTTCCCTTTTATATTTCATTTTAAACAAATATCTTTGCTGATTTTCAGTGTCAGTCTATTCTGGACAGGTGCTGTACTCTGTAATACTGTACATGTAATAGTGTCTGGGATGGTGTTTCTCAATCTTAACTATGGTGGTAGAGATGCGACTTCAACACCTGCTAACTCCTTAATAAGATCTTTACAACATCCCCTGACAAAATCTTTCGGAAGCATTTGTTATGGCTCATTATTTACTGCTGCTATCAGGACACTTAGGTGGGGGATACTCACCGTCATTTGCGTTTCTTCGAAGATCGGCAATAATGAGTGTTTGCTTTGCTGTGTTGATTTCCTTTTCCATCTTGTGGAGACTCTAGTCCGATTCTTTAACAAGTATGCCTATGTTCAGATAGCTGGTAAAAGCTTTAACCGTTCAGCAAGGGATGCCTGATTTGGTGGTTTAGATAGAGTATTTATGATCGGAACCACATCTATGGTGATGGGGATGGTCTTGGCTGATAGTTTAAGGCAGAAAACTCTGAGACTGTTGCAAAGAATGTTGACGACGAGACAAGCAGCTCGAGCCTTCCTATTCATAAATGACCACATTTCCCAACTACGACATATCTTTGTAGGCTTGCTCAGAATCATTTGTCATTCAGTGGTTGGAAATGGTGGCTTGTCATTCGACATGGAGTATGAGCGCTTTGATTCAGGTGGCTTGTCATTCGACATGGAGTATGAGCGCTGGGTAGATGAGCGCCAAAATATAATGAGAGTCCAACTTGAGCCATTAACATATGAGCAATTGGTGGGGTTGTATAATCTTCAGCAGTCTTCAGTTCAAGCCGAGGATGCTTTATCACAAGGCATGGAGGCACTGCAACAATCTCGTTTGGAGTTACTTTCGTCAGCCTCGCTCGTGGATCAAATGGAACTTGCTATGAGCAAGCTTCAAACATTGGATGCAATCCTTCATCAGCTGCCAACAATCTTGACCATGCCACAAGTAGCACGAGCATTGCTTGTCGTCAATGACTACATTGCTCGACTAAGAAATGTCAAATGTGGGAGCTCGACCTCTCCAATGATTGACAGTAAACTGTAA 1410 0.4397 MEYPSFSSSSNSGTIATSDQNAERSRRSGDAHEAVTFEHSRRWHDVFWSGIFIIHLLFPALILGVLGLDRFQERDRLKIGIYTGPLHHHMDSSRITGRFMLLLAASRFPFIFHFKQISLLIFSVSLFWTGAVLCNTVHVIVSGMVFLNLNYGGRDATSTPANSLIRSLQHPLTKSFGSICYGSLFTAAIRTLRWGILTVICVSSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAGKSFNRSARDAXFGGLDRVFMIGTTSMVMGMVLADSLRQKTLRLLQRMLTTRQAARAFLFINDHISQLRHIFVGLLRIICHSVVGNGGLSFDMEYERFDSGGLSFDMEYERWVDERQNIMRVQLEPLTYEQLVGLYNLQQSSVQAEDALSQGMEALQQSRLELLSSASLVDQMELAMSKLQTLDAILHQLPTILTMPQVARALLVVNDYIARLRNVKCGSSTSPMIDSKL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0660 469 MobiDBLite consensus disorder prediction 1 29 - -
Lele54g0660 469 MobiDBLite consensus disorder prediction 1 22 - -
Lele54g0660 469 Pfam Plasma-membrane choline transporter 117 272 IPR007603 GO:0022857|GO:0055085
Lele54g0660 469 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 25 114 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0660 Lele-ChrLele54 13526602 13533782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0660 358 453 bZIP Transcription Factor Family AT1G68640 50.847 7.93e-22 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0660 54 13526602 13533782 Lele55g0839 55 5774065 5777456 hybridization
Lele54g0660 54 13526602 13533782 Lele56g0780 56 5945290 5956251 hybridization