Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0650 ATGAAGATATTCGTCAAGACTCTCAAGGGCACCAGCTTCGAAATCGAAGTGAAGCCTGAGGATACGGTTTCTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCAGCTGTCTATCCTGCTGCACAGCAAATGCTTATTTATCAAGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAATCAAGTAGTTGAAAACAGTTTTGTTGTAATCATGCTATCAAAGAGTAAGAGCTCATCAGGCGAGGGATCTACTACTGCACCTTCAGTTAAGGCCCCTCAAACTAGTTCAGCTCCTACGCCAGCCCCTGCATCAGCAGCACCTCAAGCTCCTGCTACAGCTGGGGCATCGCCTGCATCTGTTACTGCACCTGTGCCTGCATCTGCACCGTCACCGTCACCTTCACCGGCCCCAGCTCCAGCTCCAGCTCCAGCTCCTGCCGTGTCAGGGTCTGAGGTCTATGGGCAGGCAGCGTCTAATCTCGTTGCTGGGAACAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGTGGTAGCTGGGATAGGGATACTGTTGTCCAAGCTCTTCGTGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATACGGGTATCCCAGAGCAAGCTGAAGCTCCCCCTGTGGCTCGTGCCCCTGCAAGTGGTGCCCAAACTGGAAATGCTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCTGTTCCTTCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCTCAGGGCCTCCCAAATGTTGGTGCTGGTGCAGCTGGTGCTGGCAATCTAGATTTTCTTCGCAACAGTCAACAGTTCCAAGCGTTGCGATCCATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAGGAGCTTGGGAAACAAAATCCTCATCTGATGAGATTGATTCAAGACCATCAAGCTGACTTTCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATACAGTGGGGCAGCTGGCTAATGCCATGCCACAAACAATAGCTGTCACACCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTCGATCGTGCACTTGTTTTGGAGGTGTATTTTGCTTGTAACAAGAATGAAGAATTGGCTGCTAACTACCTCTTGGATCACATGCATGAGTTTGAGGAATGA 1203 0.4921 MKIFVKTLKGTSFEIEVKPEDTVSEVKKHIETVQGAAVYPAAQQMLIYQGKVLKDGTTLEENQVVENSFVVIMLSKSKSSSGEGSTTAPSVKAPQTSSAPTPAPASAAPQAPATAGASPASVTAPVPASAPSPSPSPAPAPAPAPAPAVSGSEVYGQAASNLVAGNNLEGTIQQILDMGGGSWDRDTVVQALRAAYNNPERAVEYLYTGIPEQAEAPPVARAPASGAQTGNAPSAAPQAAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRSMVQANPQILQPMLQELGKQNPHLMRLIQDHQADFLRLINEPVEGGEGNTVGQLANAMPQTIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0650 400 SUPERFAMILY UBA-like 336 398 IPR009060 GO:0005515
Lele54g0650 400 Pfam UBA/TS-N domain 171 206 IPR015940 -
Lele54g0650 400 Pfam UBA/TS-N domain 356 391 IPR015940 -
Lele54g0650 400 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele54g0650 400 Gene3D - 1 80 - -
Lele54g0650 400 PRINTS DNA repair protein Rad23 signature 350 366 IPR004806 GO:0006289
Lele54g0650 400 PRINTS DNA repair protein Rad23 signature 382 397 IPR004806 GO:0006289
Lele54g0650 400 PRINTS DNA repair protein Rad23 signature 367 381 IPR004806 GO:0006289
Lele54g0650 400 PRINTS DNA repair protein Rad23 signature 301 323 IPR004806 GO:0006289
Lele54g0650 400 FunFam UV excision repair protein RAD23 1 80 - -
Lele54g0650 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 353 394 IPR015940 -
Lele54g0650 400 TIGRFAM rad23: UV excision repair protein Rad23 1 399 IPR004806 GO:0006289
Lele54g0650 400 MobiDBLite consensus disorder prediction 126 146 - -
Lele54g0650 400 FunFam UV excision repair protein RAD23 homolog 347 395 - -
Lele54g0650 400 SUPERFAMILY UBA-like 165 220 IPR009060 GO:0005515
Lele54g0650 400 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Lele54g0650 400 MobiDBLite consensus disorder prediction 217 254 - -
Lele54g0650 400 Gene3D - 161 211 - -
Lele54g0650 400 MobiDBLite consensus disorder prediction 78 151 - -
Lele54g0650 400 FunFam UV excision repair protein RAD23 homolog 161 211 - -
Lele54g0650 400 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele54g0650 400 CDD Ubl_Rad23 1 74 - -
Lele54g0650 400 FunFam UV excision repair protein RAD23 B 266 331 - -
Lele54g0650 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 166 209 IPR015940 -
Lele54g0650 400 CDD UBA1_Rad23_plant 162 211 - -
Lele54g0650 400 SUPERFAMILY XPC-binding domain 271 337 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele54g0650 400 Gene3D - 348 395 - -
Lele54g0650 400 MobiDBLite consensus disorder prediction 78 104 - -
Lele54g0650 400 Pfam XPC-binding domain 275 330 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele54g0650 400 SMART uba_6 356 393 IPR015940 -
Lele54g0650 400 SMART uba_6 168 208 IPR015940 -
Lele54g0650 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 389 - -
Lele54g0650 400 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele54g0650 400 SMART CBM 273 316 IPR006636 -
Lele54g0650 400 Gene3D - 266 331 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0650 Lele-ChrLele54 13461721 13466864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0650 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 2.47e-10 56.2