Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0628 ATGTCTGCTATAACAAAGAGAGATATTAGGATGTGTTCTAAAGAAGAAGAGAGTGGTACTGAAATGAGAAGAGGCCCTTGGACCCTTGAAGAAGACAGCCTCCTCATTCACTATATCGCTCGCCATGGCGAAGGTCGCTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGAATGGGAAGAGTTGCAGACTGAGATGGCTGAATTACTTGAAACCAGATATCAAGAGAGGAAATCTTACCCCACAAGAACAGCTTTCGATCCTAGATCTTCATTCTCGGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTTCCAGGAAGAACTGATAATGAGATCAAGAACTATTGGAGAACCAGAGTTCAGAAACAAGCTCGCCAACTTAATATTGAATCTGGAAGCAAGAAATTCATCGATGCGATTCGATGTTTCTGGATGCCAAGATTAGCTCAAAAGGTTGAACAGAAGCAGAGTTCTCCTTCAACTACCTTGTACTCTTCTCTAACCGCAGACACCAACCTTCATGTTTCTTCTTCATCATTATCTTCTCCAATGTTGTCAGCCAACAACAACTCTGTTATACCTTATTCTCTGTCTTCTTCACCATCATCATCATCTTTCCAGCAGCCTGCTGCAAATTTTCCTGGTAGCTTATGTTCCATTAATCCCAGCAATTTTCCATCATCTGCAGATTCCTGGCAATTCTCGCAGCAGCAGATTCTGGGACCTTCTTCTTCAGAAATCCCAGCTAGCCCTTCTTGTTATATGTTGGAGAACAATAATAATGCTTGTTACAGCAACCAAATTCAGGAAAACTTGTTGGGGATGAACAATATGATGGCTACTTTTTCTTATGGAATGGATAATAATAATCTGATGAACCTGCAGCAAGAACCAGCGACGACGACAATGATGGAAACTTACGACATGTTGCCGTTTGATTATTATTATTATCATCAGCCAACTACAGCAGAAAGTGACTGGACGACGTTAGGAAATATGGCAGAAACTTTATGGAACATGGAAGCTCTGTAA 1038 0.4143 MSAITKRDIRMCSKEEESGTEMRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRNGKSCRLRWLNYLKPDIKRGNLTPQEQLSILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKKFIDAIRCFWMPRLAQKVEQKQSSPSTTLYSSLTADTNLHVSSSSLSSPMLSANNNSVIPYSLSSSPSSSSFQQPAANFPGSLCSINPSNFPSSADSWQFSQQQILGPSSSEIPASPSCYMLENNNNACYSNQIQENLLGMNNMMATFSYGMDNNNLMNLQQEPATTTMMETYDMLPFDYYYYHQPTTAESDWTTLGNMAETLWNMEAL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0628 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 71 IPR017930 -
Lele54g0628 345 MobiDBLite consensus disorder prediction 1 23 - -
Lele54g0628 345 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Lele54g0628 345 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Lele54g0628 345 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 39 48 IPR001345 GO:0003824
Lele54g0628 345 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Lele54g0628 345 SMART sant 23 73 IPR001005 -
Lele54g0628 345 SMART sant 76 124 IPR001005 -
Lele54g0628 345 CDD SANT 81 120 IPR001005 -
Lele54g0628 345 CDD SANT 26 71 IPR001005 -
Lele54g0628 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Lele54g0628 345 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Lele54g0628 345 MobiDBLite consensus disorder prediction 8 23 - -
Lele54g0628 345 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Lele54g0628 345 FunFam Myb transcription factor 24 76 - -
Lele54g0628 345 FunFam MYB transcription factor 80 122 - -
Lele54g0628 345 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 200 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele54g0628 345 Gene3D - 80 125 - -
Lele54g0628 345 Gene3D - 24 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0628 Lele-ChrLele54 13207115 13208408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0628 21 163 MYB Transcription Factor Family AT1G68320 79.021 1.95e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g0628 Myb_DNA-binding 6.1e-14 CL0123