Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0623 ATGGAGGATCCGATTGATCATTACCAAACCAAAAGAACGAACCCCACCAATTCAACCACGAGAGTAAAGCTCTTCGGCTTCAATGTTCAAGAAGATATGGAAGATGAAGCAGTAGGGCTTGAAGAAGTATCAGATTCCACAGGCAAGCCTGCCACCCCATCTGGCTCGCCGGATTCCGGCGGCGGCAGTGGGGCGGCGTTCCTTCCCTCCTCTGGTGACAGGAGATACGAGTGTCAGTATTGTTGCAGAGAGTTTGCTAATTCACAAGCGCTTGGTGGGCACCAGAACGCTCACAAGAAAGAGCGTCAACAACTAAAACGAGCACAGTTGCAAGCCACGCGCAACGCCGCCGTTTCGTTTGTTCGGAACCCCATAATCTCCTCCTTCGCCCCTCCGCAGCACCTCCTTGCTCCGAACGGGTCCGTTGTGCTCCCGGCAGCTCCGGCGTCATGGGTTTACATGCCACCACGCTCCGCGCCGTCTCCATTCCACGTGTCGGTGTCGCACGGCTGTGTGTTCCCCTCGTCATCGCCGAATAACTCTATGAATTATACGGGTATTACAGGTGGGAGATCTGCAGGTGCAGGTACGGTTCCCTTTGGGGGCAGTGCAGGGGATTCGTCATCCACATTGTCGTCCCTCGGGTCTCCACAAGCACTGTCTCGGGTCAACGACCGGGTCGACGGGCCATCCTTGAGTCGGTTCTCCAAGGTGGAAGCTGGGCCCAATTTCGATGATTCACTGGGTTTGGACTTACATCTCAGCCTTGCACCAGCTGCGCCGTGA 786 0.5585 MEDPIDHYQTKRTNPTNSTTRVKLFGFNVQEDMEDEAVGLEEVSDSTGKPATPSGSPDSGGGSGAAFLPSSGDRRYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISSFAPPQHLLAPNGSVVLPAAPASWVYMPPRSAPSPFHVSVSHGCVFPSSSPNNSMNYTGITGGRSAGAGTVPFGGSAGDSSSTLSSLGSPQALSRVNDRVDGPSLSRFSKVEAGPNFDDSLGLDLHLSLAPAAP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0623 261 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Lele54g0623 261 MobiDBLite consensus disorder prediction 202 220 - -
Lele54g0623 261 MobiDBLite consensus disorder prediction 198 243 - -
Lele54g0623 261 SUPERFAMILY beta-beta-alpha zinc fingers 72 103 IPR036236 -
Lele54g0623 261 PANTHER ZINC FINGER PROTEIN 5 11 260 IPR044299 GO:0010090
Lele54g0623 261 MobiDBLite consensus disorder prediction 34 68 - -
Lele54g0623 261 MobiDBLite consensus disorder prediction 1 22 - -
Lele54g0623 261 FunFam Zinc finger protein 6 68 126 - -
Lele54g0623 261 Gene3D Classic Zinc Finger 68 123 - -
Lele54g0623 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0623 Lele-ChrLele54 13130431 13131216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0623 18 259 C2H2 Transcription Factor Family AT1G68360 46.094 3.09e-54 174