Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0622 ATGGGGACGGGTTCCAAGATCGATGGATCTTCTACCCCATCAATTCGACGAGACCCTTACGAGGTATTGTCCGTGTCAAGGGACGCAAATGATCAGGAAATAAAAACGGCTTACAGAAAGCTCGCTCTCAAGTATCACCCTGACAAGAATGCTAACAATCCTGAAGCATCAGAACTATTTAAAGAGGTTGCATATTCTTACAACATCTTATCTGATCCAGAGAAGAGAAGGCAGTATGACAGTACAGGATTTGAGGCACTTGATGCTGATAACTTGGACATGGAAATCGATTTGTCAAATCTTGGAACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACTACCATCTCAGCAAATGTTCTTGAAGAAGCCCTGAATGGCACAGTTACAGTCAGACCACTTCCTATAGGAACGTCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACGATAAATGAGCAGCAAGCTGAGGCAGGGATTGTAGTGAGAGTTACTTCAACTGCACAAAGCAAATTCAAACTGCTCTACTTTGAACATGATGCAAATGGTGGGTATGGTTTGGCGTTACAGGAAGATAGTGAGAAGACCGGCAAGGTGACATCCACTGGCATGTATTTCTTACATTTTCAAGTATACAGAATGGATTCAACTGTGAATGCGTTAGCAATGGCGAAGGATCCTGAAGCTGCTTTCTTCAAAAGGTTGGAAGGTCTACAACCTTGTGAAGTCTCAGAATTAAAGCCTGGCACTCATATATTCGCTGTCTATGGAGATAACTTCTTTAAGACTGCTACCTATACAATTGAGGCTCTTTGTGCAAAAACTTTTGAGTATACCTCTGAAAAACTTAAGGACATTGAAGCTCAAATTCTTAGAAAGAGGAATGATTTGCGCCAATTTGAATCAGAATACAGAAAGGCATTGGCGCGCTATCAAGAGGCGACTGAAAGATATGCTCAAGAAAAACAATCAGTGGATGAACTTCTGAAACAGAGAGACACTATCCATTCTTCCTTCACTATTGCTAGGTCTGTCTCTGTTAGCGGGAACAGTAGTAATTTGAGTAACGGAAGTAGTAGCAAAATCGCAGTTGAAGATTCCAACAAGGTAGAGAGCCCTGTGGAAGATGGGGGAAGCTCAGATGGCAAGGATAAATCAGGCAAAAAGAAATGGTTTAACCTCAATCTTAAGGGGTCTGATAAGAAAAATTAA 1248 0.4159 MGTGSKIDGSSTPSIRRDPYEVLSVSRDANDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYNILSDPEKRRQYDSTGFEALDADNLDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAEAGIVVRVTSTAQSKFKLLYFEHDANGGYGLALQEDSEKTGKVTSTGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTATYTIEALCAKTFEYTSEKLKDIEAQILRKRNDLRQFESEYRKALARYQEATERYAQEKQSVDELLKQRDTIHSSFTIARSVSVSGNSSNLSNGSSSKIAVEDSNKVESPVEDGGSSDGKDKSGKKKWFNLNLKGSDKKN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0622 415 Pfam DnaJ domain 18 80 IPR001623 -
Lele54g0622 415 MobiDBLite consensus disorder prediction 380 415 - -
Lele54g0622 415 MobiDBLite consensus disorder prediction 1 23 - -
Lele54g0622 415 SMART dnaj_3 17 75 IPR001623 -
Lele54g0622 415 CDD DnaJ 18 72 IPR001623 -
Lele54g0622 415 FunFam Chaperone protein dnaJ 16 3 100 - -
Lele54g0622 415 SUPERFAMILY Chaperone J-domain 17 87 IPR036869 -
Lele54g0622 415 MobiDBLite consensus disorder prediction 359 378 - -
Lele54g0622 415 MobiDBLite consensus disorder prediction 359 415 - -
Lele54g0622 415 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 11 414 - -
Lele54g0622 415 Coils Coil 295 343 - -
Lele54g0622 415 PRINTS DnaJ domain signature 20 38 IPR001623 -
Lele54g0622 415 PRINTS DnaJ domain signature 38 53 IPR001623 -
Lele54g0622 415 PRINTS DnaJ domain signature 75 94 IPR001623 -
Lele54g0622 415 PRINTS DnaJ domain signature 55 75 IPR001623 -
Lele54g0622 415 Gene3D DnaJ domain 4 99 IPR036869 -
Lele54g0622 415 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Lele54g0622 415 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0622 Lele-ChrLele54 13108194 13113130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0622 9 91 C2H2 Transcription Factor Family AT1G74250 40.909 6.49e-13 68.6