Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0601 ATGAGTTCTTCAGTTCCTAGTTTTGCTCAAGGGCTTAAGATTTTGCTGGTTCATAATGACACCTTGTCCATCATCAACTTGACATCTATGCTTCAGAAATACTCATTCAGAGTCACTGCTACTGATGAGGCAAAAGCAGCTGTGTCCATGATTTGTCATGCTGAAGAAGCCCAATTCAACCTGGTAATGGCTAAAGATAACTTGCCTGACATGGATACTCTTTCATTTCTCCACTTCATGCTTGGAAACTACATCCCTGTCATCTTCATCTCTTCTGGAGAATACAATGATGTAAAATGGAAAGCATTGGCTAAAAGCTCATGTTTTTTCCTGGAAGAACCTATCCTTTTAGAGGATCTCAAATATGTGTGGCAGCATGTTTATCACACAAAAGTTAACTTGGCCAAGAAAAATGATCAACAAACTTGTGTAAGCAAGGTTCATGGAACTCTTAATGATAGAAAAAATGTGGGAAAAGAAAAGAGAAAAAGGTTAGAGATGAACTTTGACAGCAATCACCTTACTGCTTTTATGGAGGAGGATGAGCATACAGCAGAAAGAGAACAACAAAACTATGACGAATTTTCCGAGAAAAGGCCGCGTATTGTTTGGACTCCAAAGCTGCATCAGAAGTTCTTGGATGCCATTAATGTTCTGAGCGAGAGGAATAATATTCGCCCAAAAGCAATACTTGAACAGATGAATGTGCCTAACCTCACAGCTCGCCAGATTTCAAGTCATCTTCAGAAATACAGAACTCAAGAATTGATAAACCAGCAGCCTTGCATTTCTGGATTCACTTCCTCACCATTTCAGAGCCAAGGTTATCCAGACCTTAATGGGAGCCAAAATCAAAACCAGTGTTCAATGATTTTCATTGAAACTCAAGAATCAGATATGCCACAAATGGATGAATTTCCAAGAGGCAATTATGGAACCCAAAACCTAGAAGCTGAAGTGGGACAGCCAAAACCAGATGCTTCAATGGAACAAAACCAACCCATGAGAGCACATGATGATCCTATGAAAATGCTTGAGGAAGATTTTGAAGAACATGATTATTCTCAGAATGGAGTACTTCAAGATCAAATTGATCAATACTGTGAGATGCTAAGGAACACTCTTTTAAGAAATAATAGCCCTCATCATGATCCTCAAGATCCTGATATATGA 1173 0.3896 MSSSVPSFAQGLKILLVHNDTLSIINLTSMLQKYSFRVTATDEAKAAVSMICHAEEAQFNLVMAKDNLPDMDTLSFLHFMLGNYIPVIFISSGEYNDVKWKALAKSSCFFLEEPILLEDLKYVWQHVYHTKVNLAKKNDQQTCVSKVHGTLNDRKNVGKEKRKRLEMNFDSNHLTAFMEEDEHTAEREQQNYDEFSEKRPRIVWTPKLHQKFLDAINVLSERNNIRPKAILEQMNVPNLTARQISSHLQKYRTQELINQQPCISGFTSSPFQSQGYPDLNGSQNQNQCSMIFIETQESDMPQMDEFPRGNYGTQNLEAEVGQPKPDASMEQNQPMRAHDDPMKMLEEDFEEHDYSQNGVLQDQIDQYCEMLRNTLLRNNSPHHDPQDPDI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0601 390 Pfam Myb-like DNA-binding domain 204 252 IPR001005 -
Lele54g0601 390 SUPERFAMILY Homeodomain-like 198 253 IPR009057 -
Lele54g0601 390 PANTHER - 4 254 - -
Lele54g0601 390 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Lele54g0601 390 Gene3D - 8 141 - -
Lele54g0601 390 FunFam Two-component response regulator 196 256 - -
Lele54g0601 390 Coils Coil 178 198 - -
Lele54g0601 390 Gene3D - 196 256 - -
Lele54g0601 390 SUPERFAMILY CheY-like 10 132 IPR011006 -
Lele54g0601 390 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 254 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0601 Lele-ChrLele54 12903998 12909899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0601 5 254 Response Regulator Gene Family AT1G68210 33.700 2.43e-34 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele54g0601 Myb_DNA-binding 8.7e-06 CL0123