Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0559 ATGACCGGCGGAGCTGCCAGAGCCGTTGCCGGAGATCGTACTCCGGAACTTATTAGTCTAGTTCATGACATTGTTGGAATGTGCGGTGGAGTTGGGGGATCCTCTTCCGCTACTGCCATTGACGCCGATGCTATGTTCAAGAAGGACTGCACCGATCTGGTTCGTCGGATCTCTTTACTTACGTATTTGTTCGAGGAGATTAGGGACTCGAAGAAGGCAGTCATTGATTCTGGAAACTCGGATGCTTCTACTTTGTCCAACGGCTCTGAATCTTCCTGGTCCTCTGATCTGGTGCTCGCTCTCCACTCTGCTAAGCGCCTTATTTCAGTCGCTAGGAACTTCCGTTCTAATTCATCTTCTGATGGAGCTGCCAAGAAAATTGTATTCCAATTTCAGTGCGTGACATGGAAATTGGAAAACCTATTAAGCGTCTTACCCTATGATGATCTAGACATATCAGAGGAAGTCAGGGAACAGGTGGAGTTGGTCAGAACACAATTGAGACGAGCCACTGAAAAATATGAATATATGATTTCAAAGCTGTCATCTTATGACTTATCTCAGCCAATGATGGCTCTAGAAATTAGTCAAAATCTTGGTAGATCTGTGAGTGGATTGCATAAACAACATAGCTGTCCTGATCATTTATCAGATCTAGAAAGCATTACTAGAAACAATGGATGGACAAGTTGCAGCTCAAATCAGACAAGCCCTCGCTTGGAAAGGTCACAGAGCATTCCTGCATCATCTGAGGTTTCATTATCAAATCTTGTTGATCCTGAAGGTCAAGAAAATTATGTGAAAAAGAGTCTGACTGAAATGAAAAAGCCTGAGGCAATTCGTATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAATTAGTGAGGGATCCTGTTATTGTGGCCACAGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATGGGGGAAATACAACATGTCCAAAAACTCAGCAGAATCTCCAACATTTGACACTTACACCAAACTATGTGTTAAGGAGCCTTATAACTCGGTGGTGTATGGAGCATAATATTGAGCAGCCAACAGGACTTACAAATGGCAAGATAAAAAAGAGTGATGGATCATTCAGAGATGTTACGGGAGACATGGCCGCCATTGGAGCTCTTGTCCAGAAGCTCTCTAGCCACAACGTTGAGGAACTTAGAGCGGCTGTTGCTGAAATTCGATCACTTTCCAAAAGAAGTACAGATAACAGAATACTAATTGCTGAAGCGGGAGCAATCCCAATTCTTGTTAACCTTTTAACATCAGAAGATGTGTTGACCCAAGAAAATGCCGTTACTTCCATTCTCAACCTCTCTATTTACGAGAACAACAAAGGACTTATAATGCTTGCTGGTGCCATCCCATCCATTGTCCAAATCCTAAGAGCTGGAAATTCAAGCAAATCGATGGTCGACGAAGCCTTGACAATAATGTCTGTTCTCGCCAGCCACCAAGAAGCAAAGATTGCTATTGTAAAGGCCAGCACTATACCTGTTCTTATCGACCTGTTGAGGACCGGATTGCCGCGAAACAAAGAAAATGCTGCAGCCATTTTACTGGCCTTGTGTAAGAGGGATCCCAAAAATCTGGCGTGTATAAGCAGACTGGGTGCTATCATACCTTTGACAGAACTTGCTCGGAGTGGCACAGAAAGGGCTAAAAGGAAGGCTACTTCACTATTAGAGCATCTTTGA 1728 0.4346 MTGGAARAVAGDRTPELISLVHDIVGMCGGVGGSSSATAIDADAMFKKDCTDLVRRISLLTYLFEEIRDSKKAVIDSGNSDASTLSNGSESSWSSDLVLALHSAKRLISVARNFRSNSSSDGAAKKIVFQFQCVTWKLENLLSVLPYDDLDISEEVREQVELVRTQLRRATEKYEYMISKLSSYDLSQPMMALEISQNLGRSVSGLHKQHSCPDHLSDLESITRNNGWTSCSSNQTSPRLERSQSIPASSEVSLSNLVDPEGQENYVKKSLTEMKKPEAIRIPEDFLCPISLELVRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQNLQHLTLTPNYVLRSLITRWCMEHNIEQPTGLTNGKIKKSDGSFRDVTGDMAAIGALVQKLSSHNVEELRAAVAEIRSLSKRSTDNRILIAEAGAIPILVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGNSSKSMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDPKNLACISRLGAIIPLTELARSGTERAKRKATSLLEHL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0559 575 CDD RING-Ubox_PUB 286 328 IPR045210 -
Lele54g0559 575 FunFam RING-type E3 ubiquitin transferase 365 460 - -
Lele54g0559 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 507 IPR000225 GO:0005515
Lele54g0559 575 Gene3D - 464 575 IPR011989 -
Lele54g0559 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Lele54g0559 575 SUPERFAMILY RING/U-box 277 356 - -
Lele54g0559 575 FunFam RING-type E3 ubiquitin transferase 279 355 - -
Lele54g0559 575 Pfam Armadillo/beta-catenin-like repeat 412 450 IPR000225 GO:0005515
Lele54g0559 575 Gene3D - 364 463 IPR011989 -
Lele54g0559 575 Coils Coil 153 173 - -
Lele54g0559 575 SUPERFAMILY ARM repeat 378 575 IPR016024 -
Lele54g0559 575 PANTHER U BOX DOMAIN-CONTAINING 481 574 - -
Lele54g0559 575 Pfam U-box domain 282 353 IPR003613 GO:0004842|GO:0016567
Lele54g0559 575 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Lele54g0559 575 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Lele54g0559 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 361 IPR013083 -
Lele54g0559 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 380 422 IPR000225 GO:0005515
Lele54g0559 575 SMART arm_5 411 451 IPR000225 GO:0005515
Lele54g0559 575 SMART arm_5 452 494 IPR000225 GO:0005515
Lele54g0559 575 SMART arm_5 495 535 IPR000225 GO:0005515
Lele54g0559 575 FunFam RING-type E3 ubiquitin transferase 481 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0559 Lele-ChrLele54 12302211 12305113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0559 27 534 U-box Gene Family AT1G23030 55.039 6.41e-168 489