Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0546 ATGGAACAAGAGGCTTCAAAACTCCCATTACCAGATGCTTTCCTTTCGTTTCTGGAGGCGAATGGGCTTGACCCTTCAATTTATACCTCTCTTGATTCTATTCCTCGATACATTCGTTTGAAACCTAATTGTGAAGCATATCTTGAAGAGTTTGAAGCAGAGATGAATTGTAAGCTCCAGCGAGTAGACTGGTTGCCAGGTTTTTATTCTCTTCATTCCAATATACAGATTGCTAACTCAAAGGCATACCAAGAAGGCAAGATATATGGAATCGATGCATCTTCTGGTGCTGCTGTTATGGCTTTGAATGTATCAGCAGGAGACCACGTTCTTGATCTCTGCGCCGCTCCTGGTGCTAAACTTTGTATGATATTAAACCTTCTTGGTGATTCAGGATCTGTTACTGGTGTAGACGCTGCAAGACATCGTTTAGCAGCATGTAGAACAATGCTTCAGAAGTATAATGTGGGCAATCGATGCCGGCTTTTTGTTGCTGATGGAACAACATTTTCACATATTCCTTCAGGATTCTGTTCAGATAATACATCATGTGAATCTCTATTGGCAGAAAAAGCTGATGTATTCAAGGAGTGGACATCTAAAAGAACATGGAAAGAGAGGAAAAGGGCAAGAAAAAGTGGAAATACACAACTGGTCTCTGGCTCTCAACCTCCTGACCTCATTTATTATGGGCGGGATTCTGGAGTTGTTGGACTTACAAAAGAAGATCTATGTAAGGATGTATCTGACAGAAAGATTATGAGCCATGGCTATGACAAGGTCCTTGTGGATGCAGAGTGCACCCATGATGGTTCAGTCAAACACATCCAGAAGTTTGAACATTGGGGCTGGAAAACTCTCGATCGCCGCGTGCTAGATGCAGATAGGACTGATAACTTGTTTACTCTTCAGTTGAGTCTTCTAACCAATGGATTCAGACTTCTAAAAGTTGGAGGATCACTTGTCTACAGCACTTGCAGCTTAACTATTGCTCAGAATGAAGATGTGGTAGAGCAATTTCTGAAGGAAAATGTATCTGCTGAATTACAGGAGATAGAAGCTGCCAGAAGTTGGCCTTGTAAGGGTGGTCGGATACAAAAAACATACCGTTTTGATCCATTAACATCTCAGACTAGTGGACTCTTTGTGGCAAAATTCACAAAATTGGCCCTTTAA 1176 0.4158 MEQEASKLPLPDAFLSFLEANGLDPSIYTSLDSIPRYIRLKPNCEAYLEEFEAEMNCKLQRVDWLPGFYSLHSNIQIANSKAYQEGKIYGIDASSGAAVMALNVSAGDHVLDLCAAPGAKLCMILNLLGDSGSVTGVDAARHRLAACRTMLQKYNVGNRCRLFVADGTTFSHIPSGFCSDNTSCESLLAEKADVFKEWTSKRTWKERKRARKSGNTQLVSGSQPPDLIYYGRDSGVVGLTKEDLCKDVSDRKIMSHGYDKVLVDAECTHDGSVKHIQKFEHWGWKTLDRRVLDADRTDNLFTLQLSLLTNGFRLLKVGGSLVYSTCSLTIAQNEDVVEQFLKENVSAELQEIEAARSWPCKGGRIQKTYRFDPLTSQTSGLFVAKFTKLAL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0546 391 CDD AdoMet_MTases 110 198 - -
Lele54g0546 391 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 389 IPR023267 GO:0001510
Lele54g0546 391 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 23 389 IPR001678 GO:0008168
Lele54g0546 391 Pfam 16S rRNA methyltransferase RsmB/F 245 386 IPR001678 GO:0008168
Lele54g0546 391 Pfam 16S rRNA methyltransferase RsmB/F 99 176 IPR001678 GO:0008168
Lele54g0546 391 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 25 388 IPR029063 -
Lele54g0546 391 Gene3D Vaccinia Virus protein VP39 12 388 IPR029063 -
Lele54g0546 391 PRINTS RNA (C5-cytosine) methyltransferase signature 82 96 IPR023267 GO:0001510
Lele54g0546 391 PRINTS RNA (C5-cytosine) methyltransferase signature 111 121 IPR023267 GO:0001510
Lele54g0546 391 PRINTS RNA (C5-cytosine) methyltransferase signature 318 334 IPR023267 GO:0001510
Lele54g0546 391 PRINTS RNA (C5-cytosine) methyltransferase signature 371 388 IPR023267 GO:0001510
Lele54g0546 391 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 10 28 IPR023269 -
Lele54g0546 391 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 136 153 IPR023269 -
Lele54g0546 391 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 279 298 IPR023269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0546 Lele-ChrLele54 11916723 11920617 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0546 54 11916723 11920617 Lele49g0071 49 428648 434652 CCT
Lele54g0546 54 11916723 11920617 Lele50g0082 50 514715 527701 CCT
Lele54g0546 54 11916723 11920617 Lele51g0079 51 459987 465975 CCT
Lele54g0546 54 11916723 11920617 Lele52g0080 52 493518 500194 CCT
Lele54g0546 54 11916723 11920617 Lele56g0888 56 7465705 7478449 hybridization