Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0528 ATGTCTTGTTCTTCGTCATCATCAAGATCGCTTGTGTCTATGGGCTCTGAAAGTTCAACCACAGCACTTCAACAGCGACGTCTGTTCATTTTGCGCAGCCGATCTGAGTGGTGGGTCTACATCATGTTCTGGCAAGCTTCGAAAGACGACGACGGCGGAAGTAGTAGTAGCAGTACCAGACGCCCAGTTTTAAATTTTGGCGATAGCCACTTCCGGGGAACCAGAGAACCCAAGTCCAATGAAAACACGACGAGATTAGATCAATGGAGACGCCTTAATTACATGGAAGGCGAAGGACAACATATGACTGAGTTCGAATGGTTTTACACGTTCCATGAGTGTGAGAGAGTTCGAGAAGCTGTTTCTTATGGAATCAAAACTCTGGTGTGTATTCCAATTCCTAATGCAGTTGGAGTGCTTGAACTGGCTTCCAGTGATTTAATAACACAGGATTGGAATCTCATTCAATCAGTTAAATCAGTTTTCGAGTTCGACAACTTCATCAATATCCCCAATATTCCATCACCAAATCTGATCTCTGAACCTTACCATGATTATTTCAAGAACGAAGCTCTCATCACCGACTCTGAAGAAGCTCTTTTTGTATCTTCCTTCTCAAATCCACGAGCCATCAGGAAAAAGGGAAGATCAAACGACGCTGTTAAAGCACAAGAACTACTAATTCCTCTAAACCACGTGGAAGCTGAGGGACAGAGAAGAGAACGATTGAATCAAAGATTCTATGCTCTTCGTTCTTCTGTTCCTAATGTGTCAAAAATGGACAAAGCTTCACTTCTCTCTGATGCAGTCACTTACATTAATCAACTCAAGGCCAAAATTGAGGAACTAGAGGGTAGATTCAAGAACACAGAAGAGAAGGAAGAAGAAGCTGCGCCATTAATGCATTATAATCCGGCCTACTTAGCTTATATGAGTCTCGCCTTTATTTATACACTATAG 960 0.4229 MSCSSSSSRSLVSMGSESSTTALQQRRLFILRSRSEWWVYIMFWQASKDDDGGSSSSSTRRPVLNFGDSHFRGTREPKSNENTTRLDQWRRLNYMEGEGQHMTEFEWFYTFHECERVREAVSYGIKTLVCIPIPNAVGVLELASSDLITQDWNLIQSVKSVFEFDNFINIPNIPSPNLISEPYHDYFKNEALITDSEEALFVSSFSNPRAIRKKGRSNDAVKAQELLIPLNHVEAEGQRRERLNQRFYALRSSVPNVSKMDKASLLSDAVTYINQLKAKIEELEGRFKNTEEKEEEAAPLMHYNPAYLAYMSLAFIYTL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0528 319 MobiDBLite consensus disorder prediction 49 83 - -
Lele54g0528 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 276 IPR011598 GO:0046983
Lele54g0528 319 Coils Coil 266 293 - -
Lele54g0528 319 Gene3D - 229 294 IPR036638 GO:0046983
Lele54g0528 319 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 111 162 IPR025610 -
Lele54g0528 319 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 109 IPR025610 -
Lele54g0528 319 MobiDBLite consensus disorder prediction 49 64 - -
Lele54g0528 319 SMART finulus 233 282 IPR011598 GO:0046983
Lele54g0528 319 Pfam Helix-loop-helix DNA-binding domain 231 277 IPR011598 GO:0046983
Lele54g0528 319 PANTHER MYC 13 294 IPR045084 GO:0003700|GO:0006355
Lele54g0528 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 290 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0528 Lele-ChrLele54 11642550 11643607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0528 22 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.505 1.04e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele54g0528 bHLH-MYC_N 3.8e-12 CL0161