Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0518 ATGGAGATTTCGATTGCCAATTTTCCACCAGTGAATCTCATGGCATTTGTTCAACAAATAGCAGTTGGCAGACGCCCTGCACTGACAGTGTTTGGAAATGATTATAATACAGTTGATGACACTGGGGTGCGTGATTATATTCATATTGTTGATTTAGCAGATGGGCATGTTGCTGCATTGCGTAAACTAGATGATCCTAATATAGGTATTCCTATAATTCATCATTATTTTCTTGTTTACTTGTTTCAATGTGTTGGTTCTGTGGAGGCTAGAGGTTGTGATGTGTATAATTTAGGAACAGTAAAGGGAACATCAGTGTTAGAGATGGTCAAAGCTTTTGAAAAGGTCCCTGGAAATAAAATTCCACTTGTGATGGCTGGCCGGAGACCTGGTGATGCTGAAATTGTTCATGCATCAACAGAAAAAGCAGAAAGAGAACTTAAATGGAAGGCAAAATATAGCATTGATGCCGTGATCTATGGAATTGGGCTAGCAAAAACCCTTGTGGCTATCAATCACAGGATTCCACAAAGCAATGCTAATTGGATTATAAGTTGTAAAATAATTGCTGAAGGTGTTCCGCTGTACAGATTACTTACTTATACGAGGGATCCTTTCAATGAAGCTGTGACTCGCAAAACTAGAATTCTTGATGTAGTGTACAATGCTTCTAACAACGAGCTGGTTCGTACTCAAACATTGGTCAAGAGTGCTATTGTTCAGGTTGATGCCGCACCTTTCAAGCAGTGGTATCTCCAACATTATGGTGTTGACATCGGTCGCAAGAAGAAGACTGCAACTTCTGCCAAGAAGGAAGGCGAGGAAGGTGAAACTGCAACTGAGGAAGTGAAAAAGAGCAAACACGTATTGAGAAAGCTAGAGAAGCGTCAACAGAACCGTATGCTTGATCCTCATATTGAAGAACAATTTGGAGGAGGTCGTCTATTGGCTTGCATCTCCTCGCGACCTGGTCAATGTGGTCGTGCTGATGGCAATCTTCTTTTCCATACGGCCATAGATGCTGCTAGGAAAAAGGTGGGGGGAGGGTGCGGGGCAGATGAAACAGATGCTTCTTGTTGCCAAGGTAAAGAACTGGAATTCTACATGAAGATTCTAAGGAAGAAGGGCAAGGGTGCAGATAAATTCAATGTGTTGGGTGTTACTTTAGCGATGACTCTTGTTACTAGCAGTGCCACATGCATTGACCTTCATGATTTTGGCATAATCAGGAATTTCTTGATTTTGTTATCGAGCATTGTGATGTAG 1266 0.4163 MEISIANFPPVNLMAFVQQIAVGRRPALTVFGNDYNTVDDTGVRDYIHIVDLADGHVAALRKLDDPNIGIPIIHHYFLVYLFQCVGSVEARGCDVYNLGTVKGTSVLEMVKAFEKVPGNKIPLVMAGRRPGDAEIVHASTEKAERELKWKAKYSIDAVIYGIGLAKTLVAINHRIPQSNANWIISCKIIAEGVPLYRLLTYTRDPFNEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTATSAKKEGEEGETATEEVKKSKHVLRKLEKRQQNRMLDPHIEEQFGGGRLLACISSRPGQCGRADGNLLFHTAIDAARKKVGGGCGADETDASCCQGKELEFYMKILRKKGKGADKFNVLGVTLAMTLVTSSATCIDLHDFGIIRNFLILLSSIVM 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0518 421 Gene3D - 196 347 - -
Lele54g0518 421 Pfam GDP-mannose 4,6 dehydratase 7 159 IPR016040 -
Lele54g0518 421 FunFam 40S ribosomal protein S8 246 313 - -
Lele54g0518 421 Gene3D - 10 159 - -
Lele54g0518 421 Gene3D Ribosomal protein S8e, subdomain 245 313 IPR042563 -
Lele54g0518 421 PANTHER 40S RIBOSOMAL PROTEIN S8 207 375 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lele54g0518 421 CDD Ribosomal_S8e_like 196 334 - -
Lele54g0518 421 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 159 IPR036291 -
Lele54g0518 421 Gene3D - 52 106 - -
Lele54g0518 421 Pfam Ribosomal protein S8e 207 334 IPR022309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0518 Lele-ChrLele54 11328930 11337654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0518 207 369 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 65.644 3.68e-61 195