Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0502 ATGGCTTGCGGAAGCGAGCGGCTGGAGAAGGACGACGACGCGCCTTCACTGCCGCAGTTTCACCAGTCTGAGAAGCAAGAAGAGGCCATGGAACAGGAAGAATGTTCCAAGAATAGGCCTTCGGCGGAAGGTGGTGGTGTTCTTAGAGGGGGAAAACCAGAAAGTTTCGATCTTGACCCCGAACAAGCGAAAATTGACCCATTAACGGAAGGCACCGAAGTTGTCAAGAAAAGCCGCGGCAGAAAGCGTAAGTCAGAGACGGAGGCCTCGGAAAATGAGGTTATGGCGGAGGCGACGAGGCGTAGTGCTAGAGTATCGCAGAAATCGTACTGTAATGTTTTCTTTGACTTTGAAGACGACGAGGAAGAAGAACCTATAAAAAGGAAAAGTGGGAGAAAAGGGAGAGGTCGGAAAAAAACCAAAGTTGCCGCAAATAAAACGTCAGAAATTGAAGAATGTGTAGGAGCCGAGGACAACGGTAATTTAGTTGAAGAGAAGTTAGGACATTTGAAGCAGAGTGATCCTGGGGATGCTGTGAAGGACTGTGACGGTCTCGAAGAAGAAGTAGAAAGTAGAGATAAGAAAATTTCAAGGCGTAGGAAGGCGGCTCATAACAACGTGAAGGCAGAAGATGAAAAACTTGAAGTATCAGAAAGCAGATCAAATAAAGGTTATAGTTTCAGGGCTTCTAAATCTCAAGTTAATAGGCAGGCAAACAAGCACGATCATAAACAAGCACGATCTGAATGGATTGAGAAGGTGTCCTTAATGTGCCATCAGTGTCAGAGAAATGATAAGGGGGAGGTTGTTAGGTGTACGATATGTAAGCGGAAAAGATTTTGCATCCCGTGTATTAAGAGTTGGTATCCTCATTTGCGAGAGGAAGATATTGCTGAGAAGTGCCCCGTGTGTCGTGGAAACTGCAATTGCAAAGCATGTCTCAGCTGTAAAAAATTAATTGAAACAATGAAGAAAAAAGAAGAAAAACCAGAACCAACAATTTTCACAAATGAGGAAGGGGAACACTGTAAGTATTTGCTATCAGTGCTTCTTCCACATTTAAGGCAGCTACATGAAGAACAAATGATCGAGAAGGAGATTGAAGCTAAGAGACAAGGCATCTCACTTTCAGAGCTCCAAGTAGGAAGGGCAGATTGCACAGATGATGAGCGTGTTTATTGTGACAATTGTAAAACTTCAATTTTTGATTGTCACCGAAGCTGTCAAGAATGTTCTTTCGACCTCTGTCTGGTCTGTTGCCGTGAGATTCGCCAGGGGCAATTGGTTGGAGGTGCAGAGCCAGTTGAGTCTGAGTTTATCAGCCGGGGTTTAAAATATATGCATGGTGAGCCTGACAAGGAGTCAAAAATAACTAAATTAAATGTTGAGACAAAGACTGAGGATCGTGATTGGTCAAGATCTGGTTTGAAGGTGACAAGTGATGGTAGCATCCCTTGTCCAAGGGTTCATGGTGGTTGTGGTTGTAGTTATCTTGAACTTCGACGTATATTTCCTGATAACTGGATTTCTGAACTTGTAAAGAAAGCAGAAAATATGACCAAAGTGTATAAGCTTGATGATGCAACACTGACAAGTAACCAATGGTGTTCATGTTTCAACATAGACAGTGACAACAACAATGTTGGAAATGAGAATAGGATGAAGGCTGCTTCTCGGGAAGATCCCAACGTTAATGACAACTATATGTACTGTCCAAGGGCTGTAGATTTGGGACCTTTGGATCTGAAGCATTTTCAGTGGCACTGGAGTAAAGGAGAGCCAGTGATTGTCAGTAATGTGCTTGAATGTACATCCGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGCCAGATGACTAAAATTAATCATGATCAACATTTGGAAGTGAAGGTCCTTGATTGCTTGGACTGGTGTGAGGGCGACATCAATATCCACCAATTCTTTACCGGGTACTCACAAGGTCGAAAAGATTTTGCAATGGGGCCTCAGTTATTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACGATTACCGCGTCATTGTGCTGAGTTCATTTCTTCCTTACCATTCAAGGAATTTACAAATCCTCACAAGGGTGGTCTAAACCTTTATTCAAGGTTGCCGGAAAAAAAATATATAAAGCCAGATATTGGTCCAAAGACATATATAGCTTATGGAATTCCTATGGAGCTTGGGCGGGGTGATTCAGTGACAAAGCTTCACTGTGATATGTCTGATGCAGTGAATGTTTTGACTCATACTTTTGAGACGTCCCTTGATGATCCTCTCCTTAAAAGAATAAAGGAGTTAAAAGAACAACACCTTAAACACGACAAAAAGGAGCTATATTGTCAGGAAGAAGAAGATAATGTTGAAAATGGGAAAATTACAGATTTTGAAAATAAGTTGCCTGGATATGATTCTGTTGAGGGAGGTGCTCTCTGGGATATTTTTAGGAGACAGGATGTCCCTAAACTGCAGGAATACCTTAATAAGTACTTCAGAGAATTCAGGCATGTCAACTGCATTCCGTTGCAGCAGGTCGTTCATCCTATCCATGACCAGACATTTTATTTGACTATGGATCATAAGAGGAAGCTGAAGGAGGAATATGGAATTGAACCATGGACATTTGTTCAGAAAATGGGAGATGCAGTTTTGATTCCTGCCGGTTGTCCTCACCAAGTCAGAAATCTTAAGTCATGTATCAAGGTTGCTCTCGATTTCGTGTCACCTGAAAGTGTAGATGAGTGTCTTCGTTTGACACAGGAGTTTCGCACACTTCCCATAAATCACAGGGCTATTGAAGACAAATTGGAGGTCAAAAAAATGCTCATTCATGCCATGAGTGAAGTAGTGAAGGAATTGGAGCTATCAAGGAAGGAAGAGGAAGCTAAGGAGTGA 2922 0.4233 MACGSERLEKDDDAPSLPQFHQSEKQEEAMEQEECSKNRPSAEGGGVLRGGKPESFDLDPEQAKIDPLTEGTEVVKKSRGRKRKSETEASENEVMAEATRRSARVSQKSYCNVFFDFEDDEEEEPIKRKSGRKGRGRKKTKVAANKTSEIEECVGAEDNGNLVEEKLGHLKQSDPGDAVKDCDGLEEEVESRDKKISRRRKAAHNNVKAEDEKLEVSESRSNKGYSFRASKSQVNRQANKHDHKQARSEWIEKVSLMCHQCQRNDKGEVVRCTICKRKRFCIPCIKSWYPHLREEDIAEKCPVCRGNCNCKACLSCKKLIETMKKKEEKPEPTIFTNEEGEHCKYLLSVLLPHLRQLHEEQMIEKEIEAKRQGISLSELQVGRADCTDDERVYCDNCKTSIFDCHRSCQECSFDLCLVCCREIRQGQLVGGAEPVESEFISRGLKYMHGEPDKESKITKLNVETKTEDRDWSRSGLKVTSDGSIPCPRVHGGCGCSYLELRRIFPDNWISELVKKAENMTKVYKLDDATLTSNQWCSCFNIDSDNNNVGNENRMKAASREDPNVNDNYMYCPRAVDLGPLDLKHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQMTKINHDQHLEVKVLDCLDWCEGDINIHQFFTGYSQGRKDFAMGPQLLKLKDWPPSNLFEERLPRHCAEFISSLPFKEFTNPHKGGLNLYSRLPEKKYIKPDIGPKTYIAYGIPMELGRGDSVTKLHCDMSDAVNVLTHTFETSLDDPLLKRIKELKEQHLKHDKKELYCQEEEDNVENGKITDFENKLPGYDSVEGGALWDIFRRQDVPKLQEYLNKYFREFRHVNCIPLQQVVHPIHDQTFYLTMDHKRKLKEEYGIEPWTFVQKMGDAVLIPAGCPHQVRNLKSCIKVALDFVSPESVDECLRLTQEFRTLPINHRAIEDKLEVKKMLIHAMSEVVKELELSRKEEEAKE 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0502 973 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 29 966 IPR045109 GO:0032454|GO:0033169
Lele54g0502 973 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 254 324 IPR018866 -
Lele54g0502 973 MobiDBLite consensus disorder prediction 203 219 - -
Lele54g0502 973 MobiDBLite consensus disorder prediction 220 234 - -
Lele54g0502 973 FunFam Transcription factor jumonji domain-containing protein 566 941 - -
Lele54g0502 973 Gene3D Cupin 575 941 - -
Lele54g0502 973 ProSiteProfiles JmjC domain profile. 702 932 IPR003347 -
Lele54g0502 973 MobiDBLite consensus disorder prediction 54 95 - -
Lele54g0502 973 SMART cupin_9 683 932 IPR003347 -
Lele54g0502 973 MobiDBLite consensus disorder prediction 120 145 - -
Lele54g0502 973 MobiDBLite consensus disorder prediction 1 38 - -
Lele54g0502 973 Pfam JmjC domain, hydroxylase 819 915 IPR003347 -
Lele54g0502 973 MobiDBLite consensus disorder prediction 190 246 - -
Lele54g0502 973 ProSiteProfiles Zinc finger RING-type profile. 258 305 IPR001841 -
Lele54g0502 973 SUPERFAMILY Clavaminate synthase-like 578 962 - -
Lele54g0502 973 MobiDBLite consensus disorder prediction 1 95 - -
Lele54g0502 973 Coils Coil 952 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0502 Lele-ChrLele54 7700747 7709965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele54g0502 JmjC 6.2e-14 CL0029