Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0495 ATGGGTCACCATACTTGCTGCAATCAACAGAAGGTTAAAAGAGGGCTTTGGTCTCCTGATGAAGACGAGAAACTCATTCGATACATTTCCACTCATGGCTATGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGCAAAAGTTGTAGATTGAGATGGATTAATTACTTGAGACCTGATATAAGAAGAGGCAGATTTAGTCCTGAGGAGGAAAAGCTAATTATAAGCCTTCATGGGGTCGTAGGCAACAGATGGGCTCACATAGCGAGCCACTTGCCCGGCAGAACTGACAATGAAATAAAGAATTATTGGAATTCTTGGATCAAAAAGAAAATCAGAAAGCCTTATTCTTCTTCTTCAACCACCACTACACAAACCGTGAATCATCATCATCATCAACATCATCATCTTCCCCAATTCAGCCATAACAATATTAATAATCCCAATAATCAATTTCACTTTATTACCACCCAAGATCATAACTTAATCACATCAAAACCACCACTTCATGAAACCTTATTGTTCTCTCCCACCTGTCCGTTGTTCATGTTCGACACCAGTACTACTTCACTACATCATGGGATTACAACAACAAACACTTCAGACATCGTCCTCAACAACAACAACAACGGCGCGGTAGCAGCAGCAGAAGTGTTCCAAGATGGTAATACTGTAAGTTTGATGAGCTCGGACGATACTTGGAATTTGAGCCAACATCATCATCTTCTTCTTCCTCCTTCTTCTGCAACAACAACTTTTACAGGCATGGACAATAATGCTAGTTTGCCACCTTTCATAGAAAACATTGTTAATGTTAATAATAATAATAATAATCCTGCGCAAGTAGAGGCATGTTGTATAGAGGAAGAAGAAGATCATATAGCAGCTATGGAGGGTTTGAGGAGGCAAGATGATGATCAGTTGAATAACATTGATAATTGGGTGGAGACGACAGGCCAACAACAATGTCCTAACTTCTTGTTCTGGGACAACCTTAGTGGGGATTAA 1020 0.4039 MGHHTCCNQQKVKRGLWSPDEDEKLIRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPYSSSSTTTTQTVNHHHHQHHHLPQFSHNNINNPNNQFHFITTQDHNLITSKPPLHETLLFSPTCPLFMFDTSTTSLHHGITTTNTSDIVLNNNNNGAVAAAEVFQDGNTVSLMSSDDTWNLSQHHHLLLPPSSATTTFTGMDNNASLPPFIENIVNVNNNNNNPAQVEACCIEEEEDHIAAMEGLRRQDDDQLNNIDNWVETTGQQQCPNFLFWDNLSGD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0495 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele54g0495 339 FunFam Transcription factor MYB26 68 139 - -
Lele54g0495 339 FunFam MYB transcription factor 6 66 - -
Lele54g0495 339 CDD SANT 17 61 IPR001005 -
Lele54g0495 339 Gene3D - 69 142 - -
Lele54g0495 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele54g0495 339 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele54g0495 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele54g0495 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele54g0495 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele54g0495 339 PANTHER MYB DOMAIN PROTEIN 55 1 287 - -
Lele54g0495 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele54g0495 339 SMART sant 13 63 IPR001005 -
Lele54g0495 339 SMART sant 66 114 IPR001005 -
Lele54g0495 339 MobiDBLite consensus disorder prediction 120 145 - -
Lele54g0495 339 CDD SANT 69 112 IPR001005 -
Lele54g0495 339 Gene3D - 5 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0495 Lele-ChrLele54 6225959 6227899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0495 1 336 MYB Transcription Factor Family AT1G63910 47.778 5.49e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g0495 Myb_DNA-binding 8.1e-15 CL0123