Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0481 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGCAGGGCAGAGTTTTAGTGTTTCATCGTCCCGGTCACTGAATATACCGTCAGGGCCTGTATATTTTCCCACCGAGGATGAGTTCACAGACCCCTTGGAATATATTTATAAGATTAGGCCTAAAGCGGAGCCATATGGAATTTGTAAGATTGTACCCCCAAAGAGTTGGAAACCGCCATTTGCTTTGGATCTAGATTTTTTTACTTTCCCTACTAAAACACAGGAAATTCACAAGTTACAGGCTCGTCCTGCTGCGTGTGACTCCAAGACTTTTGATTTGGAGTACTCTAGGTTTTTAGAGGATCACTGTGGTAGAAAGTCAAGGAAGAAAATTGTATTTGAAGGGGAAGAACTGGACTTGTGCATACTGTTTAATGCTGTTAAGAGATTTGGTGGGTATGATAAGGTTGTGAAGGAAAAGAAATGGGGGGATGTTTCACGGTTTTTAAGGCCAGGAAGAAAAATTACGGACTGTGCAAAGCACGTCCTATCACAATTGTACTGTGAACATTTGTATGATTATGATAATTTCTATAATCAGCTGAATCAAGAGACAGGTAAGAAAGGCATGCTTGAGGGTGATAAAAGTGATCATGGTGTTCGATCTTCTGGATCCAAGAGGATGAGAAGAAGTTCTGATTGTTTGAAAGTTAAGGATTGTAAAGTGCAGGAGGAAGAACATGACCAGATTTGTGAGCAATGCAGAAGTGGTTTGCATGGGAACGTGATGCTTTTGTGTGATAGGTGTGATAAGGGTTGGCATATATATTGTCTCTCACCACCCTTGAAGCAAATTCCTCCAGGAAACTGGTATTGCTTTGATTGCTTGAACTCTGACAGGGACAGCTTTGGTTTTGTGCCTGGTAAGCAGTACACCTTGGAAACCTTTAGACGTGTGGCTGGTCGGTCAAGGAGGAGATGGTTTGGACCAGGACCTGTTTCAAGGGTGCAAATAGAGAAGAAATTTTGGGAGATTGTAGAGGGATCAGTTGGTGAGGTTGAGGTTATGTATGGAAGTGATTTGGATACATCTGTCTTTGGAAGTGGGTTTCCACGCTCAACTGTTCAGAAACCAGAATCCATTGATCCAAAATTATGGGATGAATACTCATCTAACCCATGGAATCTTAACAATTTTCCTAAATTGAAAGGGTCAATGCTTCGAGCTGTTCATCATAATATCACAGGGGTGATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATAAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCGGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCGCAACCGGATCTGCTTTTTCAGCTTGTAACTATGTTAAACCCATCTGTTTTGCAAGAAAATGGAGTTCCAGTCTACAGCATAATTCAGGAGCCTGGGAATTTTGTTATTACCTTTCCCAGATCTTACCATGGAGGTTTTAATCTTGGCTTGATTGCATTATCAGGTTTAAATTGTGCGGAGGCAGTTAATTTTGCCCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGGTCTCTACCAGCGATATCACAAAGCTGCTGTCTTGTCTCATGAGGAGCTTCTTTGCGTAGTAACCCAGTACAGTGACATTGATACCAGAGCGTCTCCCTATTTGAAGAAAGAATTGCTTCGAATATCTGATAAAGAGAAATCTTGGAGAGAAAAGCTCTGGAAAAATGGTATTGTCAAAACATCTCGCATGGCTCCTCGGTGTTGTCCTCAATATTTGGGAACTGAAGAGGATCCATCATGCATTATTTGCCAGCAATATCTATATCTCTCTGCTGTTGTGTGCAGTTGCAGGCCATCTTCTTTGGTATGCCTGGAGCACTGGGAACATCTTTGTGAGTGTAAAACTGTAAAACTACGTCTTCTCTATCGTCACTCACTTGCAGAATTGTATGACTTGGTACTTTCTGTGGACAATTATACTTCTGAGCACAAAGCACTGGATAGGAATATAAGAAAGAATTCATGTCCGGGTACTTTGACCAAAAAGGTAAAAGGAGGTTCTATTACTTTCTCACAGCTTGCTGCACAGTGGCTTCTGCAATCTAGTGAGATTCTTCAGAATCCTCATTCAAGTGATGCTTTTGTTTCTGCACTAAGGGAAGCTGAACAGTTTCTTTGGGCTGGTCCTGAGATGAATTCTGTTCGAGATATGGTGAAGAATTTGATCGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGTTTAAGAAAACTTGAAGCCTGGTTGTGTGATCACGACTCTGACATTGAGAAAGTTCACTTAGATTTTGTTGATGAGCTGCTAACATTTAATTTTGCACCATGCAATGAGCCTGCTTATCATAAATTGAAGGAATATACAGAAGGGGCCATATTGTTAAGTCAGGAGATTAATATTGCTTTGTCAAAGTGTTCAAAGATCTGTGAGTTGGAATCTCTATATTCTAGAGCTTGTGGCTCTCCAATCTATGTGAAAGATGTGAAGGATTTGGAAAGGAAAATTTCTTCTGCTAAGGCATGGCTGCATAGAGCTAGAAGCTGCATCTCAATAAAACATCCTGCCGCAGTAGAGTTTGATGTTCTTTTCAAGTTGAAGTCGGAGATTATGGAGCTTCAAGTTCAACTTCCAGAGATAGAAGTAATTCAGAATATATTAAGTCAAGCAGAATCTTGTAGTTCAAAATGCAGTGAGATATTACAAGGTTCCATGAATCTAAAGAATGTCAATTTGCTGCTAAAGGAATGGGACGGCTTTATGGTCGATGTACCAGAACTGAAGCTTCTGATGCAATATCATAAGGATGCTGTTGCATGGGTTTCCAACTTTAACTGTGTATTAGGGACAACACGTGAACGGGAGGATCAACATAATGTTGTTGATGAATTGAAGCATATTTTAGACGGTGGTTTATCTTTAAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGACTGAGCTGCAGAAAGCTCTTTGTCGGGAAAAGGCTCAAAAGGCACATAAATCTAAGATGTCTCTGGAATTTGTTCAAGAAGTGATGAAGGAGGCCAGACTGCTACAAATTGAGGGAGAGAAATTCTTTGTTGGTTTATCTGGTGCACTTGCTGTTGCCATACCTTGGGAAGAAAGGGCTAAACAGATTCTTTCAGACAAGCCTTCCTTCTCTGACTTTGAGGACATGACCAGGACCTCAGAAACCATATTTATGATTCTTCCTTCCCTTAATGATGTAAAGGAAGCACTATTGGAGGCTAATTCATGGTTAATGAATTCAAAACCATTCTTGGTTTCTTCTACTTGCCCATCAGATTCTCTACGGAAAGTTGAGGACCTTCAGACGTTGGTTTCTCAGTCAAAGCTTCTTAAAATATCTTTTCAAGAAATAAGGATGCTTGAAAAAGTTTTGCATGACTGCAAAGAATGGGAGTCCGGGGCATGTTCTGTATTGGAAGATGCCTGGCACATTTTGGAATTGGATGACATTGTTCATGGAATAAGCAGTGGCCTAATGTCCAAAGTTGAAGGTTTGATTGCCAGAATGCAGTCTGCCACAAGATCTGGTTTATTGCTTGGTTTTGACTTTGCTGAGATTCCAAAACTTAAAGCAACCTGTTCTACACTGCGGTGGTGTAAAAAGATTCTTTCCTTCTGCAATCTTTCTCCTTCTTTAGAGGATGTTTTGGAGGCTACAGAGCACCTTCCTCATTCGTGTGGTTCTGGGGCGCTATTGAATCTACTGATTGGTGGAGTCAAATGGCTTAGGCAAGCATTGGAAGTAATTTCTGGACCTCGCAATTTTAGAAGAAGCAAGTCAAGCGAAGTTGAAGATATTATTAGAGATTACCAGACTATTAATATTCCTTTTGTAGCAGTAATCTACCAACTTGAAGAAGCCATAGGGAAACATAGGTTGTGGCAAGAACAGGCGCATCAATTCCTTAGCCTTTGTTCTGGGGAACGGTCTTGGTTATCAATGTTGAAACTCAAGGAACTAGGTGATACTGTTGCTTTCAGCTGCACAGAACTGCATTTGATTTTATCTGAAGTTGAGAAGGTGGAGAGTTGGAAGAAACACTGCATGAATTTTGTAGGAACTTTAGTCCGAAATGAGAATTCACTTCTTGATGCTCTGCAGAAGATGAAACAGAGTCTAGATAGATCATTGTCCATATATGGCAAGTTGAAAGGCTGCAAAGAAGAATGTTTATGCATCTACTGCTTTACTGATTCTGAAGATCAGGAATTTCTTACTTGCTCCACTTGTAGAAACTGCTACCATATACTGTGTATTGGACCATTGGTGGACAATAATCATGGAAATTATACATGCCCTTCCTGTAAAATACTGAAGGGTGAATCCAATTATAAGAAGGGAACTCTCCTTGTGAGGTTTGGGGAGGAGCGTGCTGAACTAAAAGTTCTTCTTGAACTCCTTTCTGATGCTAAAAATTTGTGTGTAAGGATTGACGAGACAGATGCTCTCAACCAACTTGTTGAGCAAGCACTTCTATGCAGATCTTGCTTGAGAGAAATAGTGAACTTTACATCAGCTAATGTAGACAATGATCTTGGTATCATCTCTGAAAGATTGGCCATAGCTATAAAGGCTTGTGAAGTTGCTGGTGTCTGTGATCATCAAGATGTACATGACCTTGAGTTGGCATTAGCAAGACACCTTTGGAAAGTTCAAGTCAATGAAATGCTAAATAGTTTACAAAATCCTTCTATCCAAGAGATACAGAAGCATCTGAGAGAGGGACTGGCTCTGGAAATATCACCTGAAGATCATTTCATGCTGCGACTTGCAAAAATGACTTGCTTATATTTGCAGTGGGCAGAACTAATCAAGAAGGTTGCAGTTGATTCTGGGGCGCTCAGCCTAGATAAAGTTTTTGAACTCTTTGCAGAAGGTGAAAACTTGCCTGTTAATGTGGAAGAGGATCTCAGGATTTTAAGGGCTCGAAGTATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCAGGAAGGATGATTGCATGTAATCGGTGTAGTGAGTGGTATCACTTTGATTGCATGAAATTACCATACAGTCAAGAGTTCTACATTTGTCCTGCATGTAACCCCTCTACAGCAGGCATGCCAACATCTCTGGATGAAGAGAGATTAACTGGCGGTAAACTAGAGGAACCTAAAACACCATCTCCAAGGCATACGAATCCAAGAAAGAAACAGAAGAGAGATGAGGCAATGTGTGGAAGCGAGGATCAAATTCAAATTAATAATTTTGGGAATCTGATTGGGATAGAAAGTCTTAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCGGCTAAGAAACGTGTTGACCTTCGGAGTCTTTCTTCATTTCTATGTATACACAACACTAACTGA 5514 0.4081 MGKGRPRAVEKGVAGQSFSVSSSRSLNIPSGPVYFPTEDEFTDPLEYIYKIRPKAEPYGICKIVPPKSWKPPFALDLDFFTFPTKTQEIHKLQARPAACDSKTFDLEYSRFLEDHCGRKSRKKIVFEGEELDLCILFNAVKRFGGYDKVVKEKKWGDVSRFLRPGRKITDCAKHVLSQLYCEHLYDYDNFYNQLNQETGKKGMLEGDKSDHGVRSSGSKRMRRSSDCLKVKDCKVQEEEHDQICEQCRSGLHGNVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFDCLNSDRDSFGFVPGKQYTLETFRRVAGRSRRRWFGPGPVSRVQIEKKFWEIVEGSVGEVEVMYGSDLDTSVFGSGFPRSTVQKPESIDPKLWDEYSSNPWNLNNFPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSINYLHWGEPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSIIQEPGNFVITFPRSYHGGFNLGLIALSGLNCAEAVNFAPADWLPYGAFGAGLYQRYHKAAVLSHEELLCVVTQYSDIDTRASPYLKKELLRISDKEKSWREKLWKNGIVKTSRMAPRCCPQYLGTEEDPSCIICQQYLYLSAVVCSCRPSSLVCLEHWEHLCECKTVKLRLLYRHSLAELYDLVLSVDNYTSEHKALDRNIRKNSCPGTLTKKVKGGSITFSQLAAQWLLQSSEILQNPHSSDAFVSALREAEQFLWAGPEMNSVRDMVKNLIEAQKWAEGIRDCLRKLEAWLCDHDSDIEKVHLDFVDELLTFNFAPCNEPAYHKLKEYTEGAILLSQEINIALSKCSKICELESLYSRACGSPIYVKDVKDLERKISSAKAWLHRARSCISIKHPAAVEFDVLFKLKSEIMELQVQLPEIEVIQNILSQAESCSSKCSEILQGSMNLKNVNLLLKEWDGFMVDVPELKLLMQYHKDAVAWVSNFNCVLGTTREREDQHNVVDELKHILDGGLSLKIQVDELPLVETELQKALCREKAQKAHKSKMSLEFVQEVMKEARLLQIEGEKFFVGLSGALAVAIPWEERAKQILSDKPSFSDFEDMTRTSETIFMILPSLNDVKEALLEANSWLMNSKPFLVSSTCPSDSLRKVEDLQTLVSQSKLLKISFQEIRMLEKVLHDCKEWESGACSVLEDAWHILELDDIVHGISSGLMSKVEGLIARMQSATRSGLLLGFDFAEIPKLKATCSTLRWCKKILSFCNLSPSLEDVLEATEHLPHSCGSGALLNLLIGGVKWLRQALEVISGPRNFRRSKSSEVEDIIRDYQTINIPFVAVIYQLEEAIGKHRLWQEQAHQFLSLCSGERSWLSMLKLKELGDTVAFSCTELHLILSEVEKVESWKKHCMNFVGTLVRNENSLLDALQKMKQSLDRSLSIYGKLKGCKEECLCIYCFTDSEDQEFLTCSTCRNCYHILCIGPLVDNNHGNYTCPSCKILKGESNYKKGTLLVRFGEERAELKVLLELLSDAKNLCVRIDETDALNQLVEQALLCRSCLREIVNFTSANVDNDLGIISERLAIAIKACEVAGVCDHQDVHDLELALARHLWKVQVNEMLNSLQNPSIQEIQKHLREGLALEISPEDHFMLRLAKMTCLYLQWAELIKKVAVDSGALSLDKVFELFAEGENLPVNVEEDLRILRARSMLYCICRKPFDPGRMIACNRCSEWYHFDCMKLPYSQEFYICPACNPSTAGMPTSLDEERLTGGKLEEPKTPSPRHTNPRKKQKRDEAMCGSEDQIQINNFGNLIGIESLRWQNRKPFRRAAKKRVDLRSLSSFLCIHNTN 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0481 1837 ProSiteProfiles Zinc finger RING-type profile. 1445 1489 IPR001841 -
Lele54g0481 1837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1365 1494 IPR013083 -
Lele54g0481 1837 Pfam PHD-finger 1700 1743 IPR019787 -
Lele54g0481 1837 Pfam PHD-finger 243 290 IPR019787 -
Lele54g0481 1837 SMART ARID_2 95 188 - -
Lele54g0481 1837 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Lele54g0481 1837 MobiDBLite consensus disorder prediction 1749 1784 - -
Lele54g0481 1837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1686 1743 IPR013083 -
Lele54g0481 1837 Gene3D Cupin 269 559 - -
Lele54g0481 1837 Pfam JmjC domain, hydroxylase 414 536 IPR003347 -
Lele54g0481 1837 ProSiteProfiles JmjC domain profile. 381 553 IPR003347 -
Lele54g0481 1837 SMART bright_3 99 193 IPR001606 GO:0003677
Lele54g0481 1837 CDD PHD_RSF1 244 288 - -
Lele54g0481 1837 Pfam C5HC2 zinc finger 630 681 IPR004198 -
Lele54g0481 1837 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Lele54g0481 1837 MobiDBLite consensus disorder prediction 1756 1784 - -
Lele54g0481 1837 ProSitePatterns Zinc finger PHD-type signature. 1701 1741 IPR019786 -
Lele54g0481 1837 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Lele54g0481 1837 SMART JmjN_1 30 71 IPR003349 -
Lele54g0481 1837 SMART cupin_9 381 553 IPR003347 -
Lele54g0481 1837 SUPERFAMILY FYVE/PHD zinc finger 1441 1490 IPR011011 -
Lele54g0481 1837 FunFam Transcription factor jumonji (JmjC) domain-containing protein 18 121 - -
Lele54g0481 1837 Pfam jmjN domain 32 65 IPR003349 -
Lele54g0481 1837 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Lele54g0481 1837 SUPERFAMILY ARID-like 81 196 IPR036431 GO:0003677
Lele54g0481 1837 ProSiteProfiles Zinc finger PHD-type profile. 1442 1491 IPR019787 -
Lele54g0481 1837 SMART PHD_3 243 289 IPR001965 -
Lele54g0481 1837 SMART PHD_3 1700 1742 IPR001965 -
Lele54g0481 1837 SMART PHD_3 1444 1489 IPR001965 -
Lele54g0481 1837 Pfam ARID/BRIGHT DNA binding domain 112 188 IPR001606 GO:0003677
Lele54g0481 1837 Pfam PLU-1-like protein 1145 1400 IPR013637 -
Lele54g0481 1837 Pfam PLU-1-like protein 998 1184 IPR013637 -
Lele54g0481 1837 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
Lele54g0481 1837 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 1021 - -
Lele54g0481 1837 SUPERFAMILY Clavaminate synthase-like 378 567 - -
Lele54g0481 1837 CDD ARID 100 188 - -
Lele54g0481 1837 SUPERFAMILY FYVE/PHD zinc finger 1697 1745 IPR011011 -
Lele54g0481 1837 Gene3D Cupin 13 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0481 Lele-ChrLele54 5569019 5590182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0481 23 95 JUMONJI Transcription Factor Family AT1G08620 49.351 1.02e-08 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele54g0481 PLU-1 4.4e-10 No_clan