Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0473 ATGTCTACTCCATGCCTATTACTTGAAGTCTCTGATTCTCCAAAACGAGTTCATCGACTGCGTTCAAAGAGGTTCATCATGGGTTGTGATTTTTCCAAGCTCTCATCATGCTGCTCGGTCATAGAGCAAAGAGGTCCTTTACCTGACGGCAATGTTGACGGAATTGAGAAGAAAAGTGAGACCACTCATGATGTGCCATCATTTCAAGAATACACAATTCATCAGCTCATGAAGGCTACTTGTGGATTTGCTGTTGAAAATATAGTTTCTGAACAAGGATTAAATGCTCCAAATGTGGTTTATAAAGGGAAAATAGAAAATGAAACACTAATTGCTGTCAAACGGTTTGATAAAAATGCTTGGCCTGATGCACGACAATTTTCAAATGAAGCCAAGGCAATTAGTTACCTAAGGAACGAGAGATTGGTTAGTCTACTTGGATGCTGCAGTGATGGTGATGAGAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGGCAACTCACTTGTTCCATTGGGAAACTCAGCCCATGAAATGGACAATGCGACTGAGAGTTGCTCTATACATTGCCCAAGCTTTGGAATATTGTGCAAGCAAAGGACGTGCGCTATATCATGATCTAAATGCTTATAGAGTACTTTTTGATTATGAAGGAAATCCAAGACTCTCATGCTTTGGTTTGATGAAGAACAGTCGAGATGGTAAAAGTTATAGTTCAAACTTGGCATTTGCTCCACCTGAATATCTAAAGATAGGTAGAATTACTCCAGCAAGTGTGACATATAGTTTTGGAACAATTTTGCTGGACCTTCTCACTGGAAAACACATTCCTCCAAGCCATGCACTTGACCTGATTCGGGAGAGGAACCTTGAGATGTTAACAGATTCTTGTTTAGAAGGACAATTTTCAAATGATGAAGGAACTGAATTGGTACACTTAGCCTCACAGTGTTTACAATTAGAACCGCAGGAGCGTCCTCATCCAAATTCATTGGTTACTGCTTTAATACCCCTACAAAAGGATTCCGAGGTTCCTTCTCATGTTTTGATGGGTATACCAGATTGTGATACTGCTTCATCCCTTTCACCACTTGCTGAAGCTTGTCTGAGAATTGATTTGGCTGCAATCCATGCGTTCCTTGAAAAACTTGGGTATAAAGATGACGAGGGTACTTCTACTGAGACGCATAAAACATTGAACTCAAAGAAGAAAGGTGACGCTGCCTTTAGCCATAAAGACTTTAGCACCGCAATTGGTAGTTATACACAGTTCATTGATGCTGGAACCATGGTTCCTGCAACAGTTTATGCACGCCGCAGCCTATCTTATCTCATGAAGAAAATGCCAGAAGAAGCATTGAAGGATGCATTGCAAGCACTAAGAATTTCCCCTATCTGGTACATTGCATTCTACTTACAAGCTATGGCACTTCTTGCATTGGGCAAAGAGAATGAGGCCTTTGTGGCTCTTGAAAAGGGTTCTTCACTTGAAAGTAAAAGGGAGTGGATGGTACTTCCTTTGTGTATGGGTGGTTCATTGGTCTCCAAGGAGAATTATTTTGTAAAGAGTGGAGCTACTACAGGAAATATACAAATGACTTTGCACAAGGTTTTCTTTTTTGATGCTAATCAAAACAGAACTTTCTTATGTTACAGTTTAATTTCCTGTTCTAGTACATAG 1686 0.4009 MSTPCLLLEVSDSPKRVHRLRSKRFIMGCDFSKLSSCCSVIEQRGPLPDGNVDGIEKKSETTHDVPSFQEYTIHQLMKATCGFAVENIVSEQGLNAPNVVYKGKIENETLIAVKRFDKNAWPDARQFSNEAKAISYLRNERLVSLLGCCSDGDERLLVAEYMPNDTLATHLFHWETQPMKWTMRLRVALYIAQALEYCASKGRALYHDLNAYRVLFDYEGNPRLSCFGLMKNSRDGKSYSSNLAFAPPEYLKIGRITPASVTYSFGTILLDLLTGKHIPPSHALDLIRERNLEMLTDSCLEGQFSNDEGTELVHLASQCLQLEPQERPHPNSLVTALIPLQKDSEVPSHVLMGIPDCDTASSLSPLAEACLRIDLAAIHAFLEKLGYKDDEGTSTETHKTLNSKKKGDAAFSHKDFSTAIGSYTQFIDAGTMVPATVYARRSLSYLMKKMPEEALKDALQALRISPIWYIAFYLQAMALLALGKENEAFVALEKGSSLESKREWMVLPLCMGGSLVSKENYFVKSGATTGNIQMTLHKVFFFDANQNRTFLCYSLISCSST 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0473 561 Gene3D Phosphorylase Kinase; domain 1 56 161 - -
Lele54g0473 561 SUPERFAMILY TPR-like 404 504 IPR011990 GO:0005515
Lele54g0473 561 FunFam probable serine/threonine-protein kinase At5g41260 163 354 - -
Lele54g0473 561 SUPERFAMILY Protein kinase-like (PK-like) 65 346 IPR011009 -
Lele54g0473 561 Pfam Protein tyrosine and serine/threonine kinase 100 336 IPR001245 GO:0004672|GO:0006468
Lele54g0473 561 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 56 503 IPR045845 GO:0004672|GO:0009742
Lele54g0473 561 SMART tpr_5 435 468 IPR019734 GO:0005515
Lele54g0473 561 SMART tpr_5 469 502 IPR019734 GO:0005515
Lele54g0473 561 Gene3D Transferase(Phosphotransferase) domain 1 163 354 - -
Lele54g0473 561 ProSiteProfiles Protein kinase domain profile. 86 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0473 561 Gene3D Tetratricopeptide repeat domain 393 505 IPR011990 GO:0005515
Lele54g0473 561 FunFam probable serine/threonine-protein kinase At4g35230 58 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0473 Lele-ChrLele54 5459548 5469714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0473 56 337 Glycoside Hydrolase AT3G07070 35.484 4.70e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lele54g0473 PK_Tyr_Ser-Thr 3.9e-26 CL0016