Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0456 ATGAGACAAGCAGGAGCATATTCAGGGCTACATTGCGGGGGAATGGGGCCTCACGCGCTGCCATTGGCGAGGATAAAGAAGATAATGAAGAAATCTTCTTCAGGGGATGACGTCAAGATGATATCAGGTGAGGCTCCTATTGCTTTTGCCAAAGCCTGTGAGCTCTTTATTGAAGAACTCACCAGAAGGTCCTGGATCATCACCACCCACTCCAAACGGAGGATCCTCCTCAAAGACGACGTCGCTTCCGCCATCATCGCCACCGATCTCTTCGACTTCTTGATCTCTCTCCTCACCCACGCCTCTCCCTCGTCCACCATCCAATCTTAA 330 0.5121 MRQAGAYSGLHCGGMGPHALPLARIKKIMKKSSSGDDVKMISGEAPIAFAKACELFIEELTRRSWIITTHSKRRILLKDDVASAIIATDLFDFLISLLTHASPSSTIQS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0456 109 FunFam Nuclear transcription factor Y subunit C 4 100 - -
Lele54g0456 109 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 85 IPR003958 -
Lele54g0456 109 SUPERFAMILY Histone-fold 15 94 IPR009072 GO:0046982
Lele54g0456 109 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 98 - -
Lele54g0456 109 Gene3D Histone, subunit A 11 99 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0456 Lele-ChrLele54 5028039 5028368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0456 11 98 CCAAT-HAP5 Transcription Factor Family AT1G56170 57.955 1.09e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele54g0456 CBFD_NFYB_HMF 2.9e-16 CL0012