Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0445 ATGGAGCCGGAGGAGTTCTCTTTTGATTCACCTCAAGGACATGGACTCCAGTTATGTTTTCCAACCGCTGTTTCACGGTATGCTACTCAATCCAGAATTTCTTATCCATTTTCATTCCAAGTGGTGTTTCCCCCCGTAGAACCTGAACAAGATGGATTTCTAGACAGCCGTTTGATTGAGGCAGTCAAGAAGCATAACGGAAGGAATTGGAAGAAAATAGATTCTTCTACTGGCTTTTGTTTGCTAATATATTCAAAAGTTTATGACAGTAGACTAATTTTTGAACCTGTTTATACAGCTACATACCTGCCAGGGAAAACCGATGTTCAATGCTGCCATCACTGGCAAAAAGTTTTGAATCCTGAACTTGTAAAGGGATCGTGGACAAAGGAGGAGGATGATTGTATCATTGAGCTAGTCACGAAGTATGGTTGTAGGAGATGGTCTTTTATTGCAAAATACTTGCCTGGTCGTATTGGGAAGCAATGCCGAGAGAGGTGGCATAATCACCTAGACCCAGCTATAAAGAAAGATGCATGGACAGAGGAGGAGGAATCCATGCTTGCTTTCTATCACCAAATATACGGTAGTAAGTGGTCAGAAATTGCAAGGTTTTTTCCTGGAAGGACTGATAATGCTATTAAAAATTATTGGAACTGTTCAATGAAGAAGAAGTTGGACACATCCTCACCTAGATGTGATGCAGATGTTGTTCCCTGTGATTTCAATACTTGTAGAATCAATATGTTGGTTAAAGAAGAAGGTGAGGACCTCAGTCAAATGGTTTCTCCCAAGAGGAGCTGCAGATTGAAGCGCAATATTGATTCCTCCTTAACTGAATTGACTCTTGGCATGTCACAAGATGAGAGCAGATTGATCTACTCAACAAAAGGGATAAGCTCTAAGAAAGGAGTTGTCAACAAACCCTTAACTTGTTTTGATGTTCCTCCACTGGGGCTTGCTGCTGAACTAGATTGTGTCCCTAATGAGATGTGTATGTCTCCCGATCTGCTTAAGTCTTGTTCAGATGCAAAGTTCTTCGGGGATGGCGAATGTTGCAGTCCACTTTTGAGCCGACCAGTATTCGCTAGTTACAAGGAGAATGCTCAAGTTGAACTGAGAAATAAAAGAAACAGGGTTCAAAGTCAAAACTTGTGTCCTGCAAAATTATCTCTGGTGGAAGATTTGGCTTCCCCATTAGAATCTTCTAAAGAAAATCTCATCGATGGTTATTATTATACTCCTCCCAAGTACACCGGAGGAAGTAACCCTGAATCTGTCCTCAGAAGCCTAGCTATGACCTATGAGAACATTCCTTCCATCATAAGGAGGAGAACTCACGGTAAAAGTACTCCTGAAGCTCTATGTGTTGGTTTGAATAGCTTAAACAATTTGAATTCGAAGCAGGGTGGTGCCATGTCATTCATGTATAAATCATTTACTTCTGTAAGATCTCTTCAAAGTGCATTGACTTAA 1476 0.4085 MEPEEFSFDSPQGHGLQLCFPTAVSRYATQSRISYPFSFQVVFPPVEPEQDGFLDSRLIEAVKKHNGRNWKKIDSSTGFCLLIYSKVYDSRLIFEPVYTATYLPGKTDVQCCHHWQKVLNPELVKGSWTKEEDDCIIELVTKYGCRRWSFIAKYLPGRIGKQCRERWHNHLDPAIKKDAWTEEEESMLAFYHQIYGSKWSEIARFFPGRTDNAIKNYWNCSMKKKLDTSSPRCDADVVPCDFNTCRINMLVKEEGEDLSQMVSPKRSCRLKRNIDSSLTELTLGMSQDESRLIYSTKGISSKKGVVNKPLTCFDVPPLGLAAELDCVPNEMCMSPDLLKSCSDAKFFGDGECCSPLLSRPVFASYKENAQVELRNKRNRVQSQNLCPAKLSLVEDLASPLESSKENLIDGYYYTPPKYTGGSNPESVLRSLAMTYENIPSIIRRRTHGKSTPEALCVGLNSLNNLNSKQGGAMSFMYKSFTSVRSLQSALT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0445 491 SUPERFAMILY Homeodomain-like 122 218 IPR009057 -
Lele54g0445 491 SMART sant 124 173 IPR001005 -
Lele54g0445 491 SMART sant 39 121 IPR001005 -
Lele54g0445 491 SMART sant 176 224 IPR001005 -
Lele54g0445 491 Pfam Myb-like DNA-binding domain 177 219 IPR001005 -
Lele54g0445 491 Pfam Myb-like DNA-binding domain 125 171 IPR001005 -
Lele54g0445 491 Gene3D - 178 236 - -
Lele54g0445 491 FunFam Transcriptional activator Myb isoform A 124 177 - -
Lele54g0445 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 175 IPR017930 -
Lele54g0445 491 SUPERFAMILY Homeodomain-like 55 126 IPR009057 -
Lele54g0445 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 176 226 IPR017930 -
Lele54g0445 491 Gene3D - 48 124 - -
Lele54g0445 491 Gene3D - 125 176 - -
Lele54g0445 491 CDD SANT 127 171 IPR001005 -
Lele54g0445 491 CDD SANT 179 219 IPR001005 -
Lele54g0445 491 PANTHER MYB PROTEIN-RELATED 55 144 - -
Lele54g0445 491 CDD SANT 55 119 IPR001005 -
Lele54g0445 491 ProSiteProfiles Myb-like domain profile. 172 222 IPR001005 -
Lele54g0445 491 ProSiteProfiles Myb-like domain profile. 120 171 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0445 Lele-ChrLele54 4769468 4773429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0445 55 227 MYB Transcription Factor Family AT5G02320 58.382 9.96e-65 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g0445 Myb_DNA-binding 2.5e-17 CL0123