Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0442 ATGGCTACGTCCAGGTCAATGGACCGTTCCTCTGAGGACATCGTTGATTCAACGCCTTTTCTGGGCAGTTCAAGTGGTTCTTCCGATGAATTCAATTCCGGCCGTCGATTTGTGCGGAGACAGAGCCTGCGCCAAGCAGCACGGTTCCTCAGGCAGGCCAGTAGCCGTCGGATGATGCGCGAGCCATCAATGATGGTTAGAGAGACTGCAGCCGAGCAATTAGAAGAGAGACAAAGCGATTGGGCTTATTCCAAACCCGTCGTGATTCTTGATATTATTTGGAATTTTGCCTTTGTTATTGTCTCCGCTACAGTGTTGGTTATGAGCGGAAATGAATCACCAAGTGTGCCTTTGAGGTTGTGGATTGTGGGTTATGCTATCCAATGTGTCCTTCACATATTCTGTATCTGCGTTGAGTATAGGAGGCGGAGGCGGCAGCAACAAAGTCAATCCCCGCCATCCTTGAACTCCGTGCAAGAAAGGTTTGGCAGCAGTGACAATTCGAGTTCCGGTTCAAGGGAGAATTCTGGGCATTATGAGAGTTTGCCGCAATTCCATGGGGAGGGTACAAGTAGCACTGCAAAGCATCTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATCATTGGATTTTACTGGGTGTCCTCTGGTACTCAAGCTTTAGCCAATGATTCTCCTCAGCTTTACTGGCTATGCATTATTTTCCTGGCTTTTGATGTTTTCTTCGTCATTTTCTGCGTGGCACTGGCAAGCATTATTGGCATTGCTGTTTGTTGTTGTCTTCCATGTATCATTGCTCTTCTTTATGCAGTTGTAGACCAGGAAGGGGCAACAAAACAAGACATCGAGCAGTTGTCAAAATTCAAATTCCGTAGAATAGACAATGAGAGAGTTGTCGGTAGTACACAAGGACCTGTGGGAGGAGTGATGACTGAATGTGGCTCTGATTTACCCAGTGAACACATTCTTTCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGAGGATGGGGTTGAACTGAGAGAACTTCCTTGCGGTCATCATTTTCATTGTGCCTGCGTGGACAAGTGGCTGTATATAAACGCAACTTGCCCCCTTTGCAAGTATAATGTTTTGAAGGGTAGCTTCCGTAGTCAAGAGGAAGTTTAG 1164 0.4639 MATSRSMDRSSEDIVDSTPFLGSSSGSSDEFNSGRRFVRRQSLRQAARFLRQASSRRMMREPSMMVRETAAEQLEERQSDWAYSKPVVILDIIWNFAFVIVSATVLVMSGNESPSVPLRLWIVGYAIQCVLHIFCICVEYRRRRRQQQSQSPPSLNSVQERFGSSDNSSSGSRENSGHYESLPQFHGEGTSSTAKHLESANTMFSFVWWIIGFYWVSSGTQALANDSPQLYWLCIIFLAFDVFFVIFCVALASIIGIAVCCCLPCIIALLYAVVDQEGATKQDIEQLSKFKFRRIDNERVVGSTQGPVGGVMTECGSDLPSEHILSEEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNVLKGSFRSQEEV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0442 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 380 IPR013083 -
Lele54g0442 387 PANTHER TARGET OF ERK KINASE MPK-1 53 377 - -
Lele54g0442 387 SMART ring_2 332 372 IPR001841 -
Lele54g0442 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Lele54g0442 387 SUPERFAMILY RING/U-box 323 377 - -
Lele54g0442 387 MobiDBLite consensus disorder prediction 1 34 - -
Lele54g0442 387 MobiDBLite consensus disorder prediction 148 187 - -
Lele54g0442 387 MobiDBLite consensus disorder prediction 16 32 - -
Lele54g0442 387 CDD RING-H2_RNF111_like 331 375 - -
Lele54g0442 387 Pfam Ring finger domain 331 373 IPR001841 -
Lele54g0442 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0442 Lele-ChrLele54 4658932 4664662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0442 17 380 C3H Transcription Factor Family AT1G68070 47.956 1.47e-115 338