Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0424 ATGCAAGAAGCTGGATTGGGAATTTTGGGCGGTGGGGGTTTGAGTGGAGAATTTTCGCCGTCCGGTGAGTTACTACGGCAGCTGAAGGCGGAGATTGCGGTGCATCCTCTTTGTGAGCAGCTTGTGGCGGCGCATGTCGGTTGCCTCCGTGTCGCCACTCCGATCGATCAGCTTCCTCTCATCGACGCTCAGTTATCTCAGTCTCATCAGCTTCTTCGTTCTTATGCGTCGCTTCATGCTCATTCCCTTTCACCTCAAGATCGTCAAGAACTCGATAACTTCCTGGCGCAATATTTGGTAGTGCTGTGTAGCTTTAAAGAACAGCTTCAGCAGCATGTCAGAATTCATGCGGTGGAGGCTGTTATGGCTTGTCGTGATATTGAAAATACCTTACAAGCTCTCACAGGAGTGACTTTGGGAGAAGGAAGTGGGGCAACAATGTCAGACGATGAAGACGAGTTGGCGATGGATTTCTCAATGGATCAGTGTGGCCTTGAAGGGCATGACATGATGGGTTTTGGTCCATTACTTCCTACAGAATCTGAAAGGTCCCTAATGGAAAGAGTTCGTCAGGAACTAAAGATAGAGCTGAAGCAGGGATTTAAGTCAAGAATTGAAGATGTGAGAGAGGAAATTCTAAGGAAAAGAAGAGCTGGGAAATTACCAGGTGACACAACTTCAGTTTTAAAGAATTGGTGGCAACAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCGAAACTAGTGGAAGAGACAGGGTTGCAGCTGAAGCAGATTAATAACTGGTTCATCAACCAAAGAAAACGAAACTGGCACAACAACTCTCAGTCTGTAACCTCTTTGAAGTCCAAGCGCAAGCGGTAG 870 0.4713 MQEAGLGILGGGGLSGEFSPSGELLRQLKAEIAVHPLCEQLVAAHVGCLRVATPIDQLPLIDAQLSQSHQLLRSYASLHAHSLSPQDRQELDNFLAQYLVVLCSFKEQLQQHVRIHAVEAVMACRDIENTLQALTGVTLGEGSGATMSDDEDELAMDFSMDQCGLEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSQSVTSLKSKRKR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0424 289 Pfam KNOX1 domain 28 69 IPR005540 GO:0003677|GO:0005634
Lele54g0424 289 Gene3D - 211 285 - -
Lele54g0424 289 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 275 - -
Lele54g0424 289 Pfam KNOX2 domain 85 135 IPR005541 GO:0003677|GO:0005634
Lele54g0424 289 SMART KNOX2_2 81 136 IPR005541 GO:0003677|GO:0005634
Lele54g0424 289 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Lele54g0424 289 SMART HOX_1 214 279 IPR001356 GO:0003677
Lele54g0424 289 CDD homeodomain 215 276 IPR001356 GO:0003677
Lele54g0424 289 SUPERFAMILY Homeodomain-like 214 279 IPR009057 -
Lele54g0424 289 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Lele54g0424 289 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Lele54g0424 289 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Lele54g0424 289 FunFam homeobox protein knotted-1-like 3 isoform X1 213 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0424 Lele-ChrLele54 4158367 4164391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0424 1 288 Homeobox Transcription Factor Family AT1G62990 79.110 2.92e-170 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele54g0424 KNOX2 6.4e-18 No_clan