Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0416 ATGGCTTCCAATATCCTTCGCTTTGGTAGCTTCTTGTTACTTTCATTGATCCTCATAGTCGTCGGAAACCCAGCAGCCGCCACCGGAGTGTTCCGACCAAAACCATGGGCTCTTGCTCACGCCACCTTTTACGGCGACGAAACAGCTTCTGCCACAATGGGAGGAGCATGTGGGTACGGGAACTTGTTCACGAACGGGTACGGCATAGACACAGTAGCACTGAGTTCAACACTCTTCAACAATGGCTTCGCTTGTGGAACATGTTACCAAATCAAATGCTACCAATCAAGCGCCTGTCACAAAGATGTCATGTTCACCACCGTGACGGCCACCAACCTCTGTCCACCAAACTGGGCCCAACCCTCCGACAACGGCGGCTGGTGCAACCCACCACGCGTACATTTTGACATGTCAAAGCCAGCATTCATGAAAATAGCAGACTGGAAGGCCGGTATTGTGCCGGTCGTGTACCGGCGAGTTCCTTGCAGGAGAAATGGCGGGCTGAGATTCGCTTTCCAAGGGAATGGATACTGGTTACTTGTGTATGTGATGAATGTGGGAGGAGGAGGAGATATTGGGAGCATGTGGGTGAAAGGTAGCAGAACGGGTTGGATAAGTATGAGCCATAACTGGGGAGCTTCGTATCAGGCTTTTGCGACGTTAAGTGGACAAGCTTTGTCGTTTAAGATAACATCGTACGCAACGAAACAGACTGTTATTGCTTGGAATGTTGCTCCTTCTAGTTGGTGTGTTGGGCTTACTTATTCCTCTAACGTTAACTTTCGCTGA 789 0.4981 MASNILRFGSFLLLSLILIVVGNPAAATGVFRPKPWALAHATFYGDETASATMGGACGYGNLFTNGYGIDTVALSSTLFNNGFACGTCYQIKCYQSSACHKDVMFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMSKPAFMKIADWKAGIVPVVYRRVPCRRNGGLRFAFQGNGYWLLVYVMNVGGGGDIGSMWVKGSRTGWISMSHNWGASYQAFATLSGQALSFKITSYATKQTVIAWNVAPSSWCVGLTYSSNVNFR 262
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0416 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Lele54g0416 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Lele54g0416 262 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Lele54g0416 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Lele54g0416 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Lele54g0416 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Lele54g0416 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Lele54g0416 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Lele54g0416 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Lele54g0416 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Lele54g0416 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Lele54g0416 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Lele54g0416 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Lele54g0416 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Lele54g0416 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Lele54g0416 262 PANTHER EXPANSIN-A15 15 257 IPR002963 GO:0009664
Lele54g0416 262 Gene3D - 22 163 IPR036908 -
Lele54g0416 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Lele54g0416 262 Gene3D - 167 262 IPR036749 -
Lele54g0416 262 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
Lele54g0416 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Lele54g0416 262 SMART dpbb_1 71 157 IPR007112 -
Lele54g0416 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele54g0416 Lele-ChrLele54 4003575 4004480 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0416 8 262 Expansin Gene Family AT1G12560 64.706 4.89e-125 354