Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0406 ATGGACCCAATTACAGCGCATCCCCATTCTCTTCCTCCTCCATTTCACACGAGGGATCTTCATCATCCACACCATCAATTTCACTCTCTCCACCAAAACACAGAAGATGAGCAGAGTGGAAGCAGCGGCGGCCTCAACCTCGCTCACAAAAGGGATCGAGAAGAAAACAGCAACAGCGAAGGCAAAGACATGGCTGCCGGGGCTGGCTCCGGTGAAGGCGAGATCACGAGAAGACCTCGAGGAAGACCCGCCGGCTCCAAGAACAAACCGAAGCCGCCTATTATCATCACGCGTGACAGCGCAAACGCGCTAAGAACCCACGTGATGGAGGTGGCTGACGGCTGCGATATCGTCGAGAGCGTCTCCAACTTCGCCCGGCGGAGACAGAGAGGGGTTTGCATAATGAGCGGGACAGGGACGGTAACCAACGTCAATCTGAGGCAGCCAGCTTCTCCCGGAGCCGTAGTTACTCTCCACGGAAGGTTTGAGATATTGTCACTAGCCGGATCATTCTTACCGCCGCCAGCTCCTCCGGCAGCTTCAGGATTAACGATATATTTAGCAGGAGGACAAGGGCAAGTGGTAGGAGGAAGCGTGGTTGGGACACTAATAGCTTCAGGTCCAGTGGTGATCATGGCGGCATCGTTCAGTAACGCTGCGTACGAGAGGCTTCCTTTGGAAGAAGATGATCCCTCCATGCCGATGCAAGGCGGTGGCGGTGGCGAAGTCGGAATCGGGTCACCTGGAAGTGGCGGTCAACAGCAAGCAGGGCAGATTTTAGGGGACGCAAACGCAACAGCTCCACTTTTCCATGGTCTGCCACCGAATCTTCTGAATTCTATACAGATGCCATCGGAAGCATTCTGGGCTACAGCTCGCCCTCCATATTGA 891 0.5488 MDPITAHPHSLPPPFHTRDLHHPHHQFHSLHQNTEDEQSGSSGGLNLAHKRDREENSNSEGKDMAAGAGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEVADGCDIVESVSNFARRRQRGVCIMSGTGTVTNVNLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDPSMPMQGGGGGEVGIGSPGSGGQQQAGQILGDANATAPLFHGLPPNLLNSIQMPSEAFWATARPPY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0406 296 MobiDBLite consensus disorder prediction 234 257 - -
Lele54g0406 296 Gene3D - 104 232 - -
Lele54g0406 296 CDD DUF296 105 172 IPR005175 -
Lele54g0406 296 PIRSF ESCAROLA 16 296 IPR014476 GO:0003680
Lele54g0406 296 MobiDBLite consensus disorder prediction 1 96 - -
Lele54g0406 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 291 IPR014476 GO:0003680
Lele54g0406 296 MobiDBLite consensus disorder prediction 14 32 - -
Lele54g0406 296 FunFam AT-hook motif nuclear-localized protein 104 231 - -
Lele54g0406 296 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 218 IPR005175 -
Lele54g0406 296 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 230 - -
Lele54g0406 296 ProSiteProfiles PPC domain profile profile. 101 237 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0406 Lele-ChrLele54 3874036 3874926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0406 1 296 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 57.658 1.29e-89 268