Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0380 ATGTGTGTTCTTCGAAGTGCTTTGCAGCCGCTTGTTATTGGCTCTCAGTCGCAGCCTTTACAACTCTTGGCTAAGCTGTTTCCACGGGGACTGAGCAAAACGCAATCTTCTGCGGCAAATATGGCGACGGAGTCTCTCAGAGTGACGGCGGCCTCACCTTCAGCTTCCTCTCTCCCCAATTTCAAGAATGGGTCTCAGAGGAAGCCAACCCCTCTCTCTCCACTCCCTTTCATGGGTGTTCGACCTCGACCCTCTCGTTCTCTTACTTCATCTTCTCTTTCTCATTTCTTTGGAACTTCCCCAATTAAGTCTAAATCTTCCCAGCTCTCTTATTCTCGCCACCAGAGCAGAAGAAACTTATCTGTTTTCGCCATGGCCGCTGAAGATGCGGGTCGAGCTGTTCCGTTGAAAGATTATCGCAACATTGGAATCATGGCACACATTGATGCTGGAAAGACAACCACAACCGAAAGAATTCTCTACTATACAGGAAGAAACTACAAAATTGGAGAAGTGCATGAGGGAACAGCTACCATGGACTGGATGGAACAAGAACAAGAAAGAGGGATTACCATAACTTCTGCTGCAACCACCACATTTTGGAATAAGCACCGAATCAACATTATTGATACTCCCGGTCATGTTGACTTCACCCTTGAAGTGGAGCGAGCTCTAAGGGTGCTAGATGGAGCCATATGCTTGTTTGATAGTGTTGCTGGTGTGGAACCACAATCAGAAACTGTGTGGAGACAAGCTGATAAATATGGAGTTCCGCGTATTTGTTTTGTTAACAAGATGGACCGTCTGGGAGCAAACTTTTTCCGAACAAGAGATATGATAGTGACAAACTTGGGCGCTAAACCACTCATAATTCAGATTCCAATTGGTTCGGAAGATAACTTCAATGGAGTTGTTGATCTTGTAAGAATGAAAGCTATAGTTTGGTCTGGAGAAGAGTTAGGTGCCAAGTTTGCTTATGAAGATATTCCAGACGATCTTCAAGAGTTGGCTCAAGGTTATCGATCCCAGATGATTGAAACAATAGTTGAGTTGGATGATCAAGCCATGGAGAACTACCTAGAAGGAAATGAACCAGATGAGGAAACCATCAAAAGATTAATTAGGAAGGGAACCTTATCAGGAAACTTTGTGCCAGTACTGTGTGGCTCGGCTTTCAAAAACAAGGGGGTTCAACCGCTGCTTGATGCTGTTGTGGATTATCTACCATCACCAATTGAGCTGCCACCAATGAAGGGAACTGATCCTGAAAACCCTGAAGTGATAGTAGAAAGGAAAGCAAGTGATGACGAGGCATTCTCTGGATTAGCTTTTAAGATCATGAGTGATCCATTCGTTGGTTCCCTTACGTTTGTGAGGGTGTATTCTGGAAAGCTAACTGCAGGGTCTTATGTACTCAATGCAAACAAAAGGAAGAAGGAGAGAATTGGTAGACTGCTGGAAATGCATGCAAACAGCAGGGAGGATGTTAAAGCAGCTTTAACAGGTGATATTATTGCTCTTGCAGGTTTAAAAGATACTATTACAGGTGAAACATTGTGTGACCCTGATAGCCCTGTTGTGCTTGAGCGAATGGACTTCCCTGATCCTGTGATAAAGGTTGCCATTGAGCCCAAAACTAAAGCTGATGTTGACAAGATGGCAACTGGCTTAATTAAGCTTGCCCAAGAAGATCCTTCTTTCCACTTCTCTAGGGATGAAGAGATTAACCAGACGGTCATTGAAGGAATGGGAGAATTGCATCTTGAAATCATTGTTGATCGACTCAAGAGAGAATTTAAGGTGGAAGCTAATGTTGGTGCACCCCAAGTGAACTACAGGGAAAGCATTTCCAAAGTCTCAGAAGTGAAGTATGTGCACAAGAAACAGTCAGGAGGACAAGGTCAATTTGCTGATATCACTATTCGTTTTGAACCCATGGAGGCAGGAAGCGGGTATGAGTTCAAGAGTGAGATCAAAGGAGGTGCTGTACCGAAAGAATACATTCCGGGAGTGATGAAAGGATTGGAGGAGTGTATGAGCAATGGTATACTCGCTGGATTTCCGGTAGTTGATGTACGTGCGGTACTTGTAGATGGATCTTACCATGATGTAGATTCAAGTGTCCTAGCTTTCCAGTTGGCAGCAAGAGGAGCTTTCCGGGATGGAATGAGAAAAGCAGGGCCAAAGATGCTTGAACCAATTATGAAAGTTGAAGTGGTTACTCCTGAAGATCATCTAGGAGATGTAATTGGTGATCTCAACTCAAGAAGAGGTCAGATCAACAGTTTTAGTGACAAACCCGGTGGCCTAAAGGTGGTTGATTCTCTGGTTCCTCTGGCTGAGATGTTTCAGTATGTGAGTACACTGAGGGGGATGACAAAGGGACGTGCGTCTTACACAATGCAATTAGCCAAGTTTGATGTTGTGCCTCAGCACATCCAAAACCAACTCTCCTCTAAGGAGCAAGAAGTTGCTGCTTAA 2481 0.443 MCVLRSALQPLVIGSQSQPLQLLAKLFPRGLSKTQSSAANMATESLRVTAASPSASSLPNFKNGSQRKPTPLSPLPFMGVRPRPSRSLTSSSLSHFFGTSPIKSKSSQLSYSRHQSRRNLSVFAMAAEDAGRAVPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLIIQIPIGSEDNFNGVVDLVRMKAIVWSGEELGAKFAYEDIPDDLQELAQGYRSQMIETIVELDDQAMENYLEGNEPDEETIKRLIRKGTLSGNFVPVLCGSAFKNKGVQPLLDAVVDYLPSPIELPPMKGTDPENPEVIVERKASDDEAFSGLAFKIMSDPFVGSLTFVRVYSGKLTAGSYVLNANKRKKERIGRLLEMHANSREDVKAALTGDIIALAGLKDTITGETLCDPDSPVVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITIRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGILAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFRDGMRKAGPKMLEPIMKVEVVTPEDHLGDVIGDLNSRRGQINSFSDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVPQHIQNQLSSKEQEVAA 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0380 826 Gene3D Elongation Factor G (Translational Gtpase), domain 3 536 613 - -
Lele54g0380 826 Hamap Elongation factor G, chloroplastic. 129 826 IPR030848 GO:0003746|GO:0006414|GO:0009507
Lele54g0380 826 Gene3D - 614 816 IPR014721 -
Lele54g0380 826 FunFam Elongation factor G 130 421 - -
Lele54g0380 826 MobiDBLite consensus disorder prediction 52 70 - -
Lele54g0380 826 Gene3D Translation factors 422 535 - -
Lele54g0380 826 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 137 412 IPR000795 GO:0003924|GO:0005525
Lele54g0380 826 CDD EF-G 141 411 - -
Lele54g0380 826 SUPERFAMILY EF-G C-terminal domain-like 732 821 IPR035647 -
Lele54g0380 826 CDD EFG_mtEFG_II 439 521 - -
Lele54g0380 826 TIGRFAM small_GTP: small GTP-binding protein domain 139 309 IPR005225 GO:0005525
Lele54g0380 826 FunFam Elongation factor G 537 613 - -
Lele54g0380 826 Pfam Elongation factor Tu GTP binding domain 138 410 IPR000795 GO:0003924|GO:0005525
Lele54g0380 826 SUPERFAMILY Ribosomal protein S5 domain 2-like 608 728 IPR020568 -
Lele54g0380 826 PRINTS GTP-binding elongation factor signature 141 154 IPR000795 GO:0003924|GO:0005525
Lele54g0380 826 PRINTS GTP-binding elongation factor signature 223 234 IPR000795 GO:0003924|GO:0005525
Lele54g0380 826 PRINTS GTP-binding elongation factor signature 207 217 IPR000795 GO:0003924|GO:0005525
Lele54g0380 826 PRINTS GTP-binding elongation factor signature 259 268 IPR000795 GO:0003924|GO:0005525
Lele54g0380 826 PRINTS GTP-binding elongation factor signature 187 195 IPR000795 GO:0003924|GO:0005525
Lele54g0380 826 Pfam Elongation factor Tu domain 2 453 520 IPR004161 GO:0005525
Lele54g0380 826 CDD EFG_mtEFG_C 732 810 IPR035649 -
Lele54g0380 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 410 IPR027417 -
Lele54g0380 826 CDD EFG_III 534 609 IPR009022 -
Lele54g0380 826 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 180 195 IPR031157 -
Lele54g0380 826 CDD EFG_mtEFG1_IV 612 727 IPR005517 GO:0005525
Lele54g0380 826 FunFam Elongation factor G 733 804 - -
Lele54g0380 826 Hamap Elongation factor G [fusA]. 135 821 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lele54g0380 826 SMART EFG_C_a 729 817 IPR000640 -
Lele54g0380 826 Pfam Elongation factor G, domain IV 608 726 IPR005517 GO:0005525
Lele54g0380 826 SUPERFAMILY EF-G C-terminal domain-like 533 610 IPR035647 -
Lele54g0380 826 FunFam Elongation factor G 421 536 - -
Lele54g0380 826 Pfam Elongation factor G C-terminus 730 816 IPR000640 -
Lele54g0380 826 SMART EFG_IV_2 609 727 IPR005517 GO:0005525
Lele54g0380 826 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 112 822 - -
Lele54g0380 826 TIGRFAM EF-G: translation elongation factor G 132 821 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lele54g0380 826 MobiDBLite consensus disorder prediction 52 92 - -
Lele54g0380 826 Pfam Elongation Factor G, domain III 533 606 IPR041095 -
Lele54g0380 826 FunFam Elongation factor G 614 744 - -
Lele54g0380 826 SUPERFAMILY Translation proteins 393 533 IPR009000 -
Lele54g0380 826 Gene3D - 131 421 IPR027417 -
Lele54g0380 826 Gene3D - 733 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0380 Lele-ChrLele54 3404450 3410359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0380 138 797 Eukaryotic Initiation Factors Gene Family AT1G56070 24.939 9.58e-41 159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0380 54 3404450 3410359 Lele55g1113 55 17442230 17446147 hybridization
Lele54g0380 54 3404450 3410359 Lele56g1059 56 13935331 13945056 hybridization