Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0375 ATGTCATCGTCTTCTACTACTCCCACCACCACCACTACTAGTACAGTTTCTACCTTATCTCAGCTGGACCACTTCCCTCCTTCTTCCGACCAGCTTTGTTATGTCCACTGCAACCTTTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGTACGAGCTTGTTCAAGACAGTGACTGTGCGATGCGGCCATTGCACCAACCTACTTCCCGTGATAGTGAACATCAGAGGGTTGCTTCTGCCATCACCAGATCATCAATTTCACCTCTCTAACTCTTTCTTCTCTCCTCCTCCGTCGTCTCTTAACCTCCTGGAGGAGATGCCAAACTCGTCAAATCACTACTTCGCTACTGTGCCTCCTACTACTCCTAGGGTTGCAATAGCTGATGAGCTTCCACGCCCACCACTCATAAATAGACCTCCTGAGAAGAGGCAGAGAGTCCCATCTGCTTACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGCAAATCCTGATATTACTCACAGAGAAGCCTTCAGCGCAGCTGCCAAGAATGTATGA 546 0.489 MSSSSTTPTTTTTSTVSTLSQLDHFPPSSDQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVIVNIRGLLLPSPDHQFHLSNSFFSPPPSSLNLLEEMPNSSNHYFATVPPTTPRVAIADELPRPPLINRPPEKRQRVPSAYNRFIKDEIQRIKSANPDITHREAFSAAAKNV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0375 181 Pfam YABBY protein 28 180 IPR006780 GO:0007275
Lele54g0375 181 SUPERFAMILY HMG-box 135 178 IPR036910 -
Lele54g0375 181 MobiDBLite consensus disorder prediction 1 20 - -
Lele54g0375 181 CDD HMG-box 145 172 - -
Lele54g0375 181 PANTHER PROTEIN YABBY 6-RELATED 5 180 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0375 Lele-ChrLele54 3348388 3349961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0375 28 180 C2C2-YABBY Transcription Factor Family AT2G26580 49.020 5.51e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele54g0375 YABBY 3e-58 CL0114