Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0345 ATGGAGGAGAAGCACAAATGCAAGCTCTGCTCCAGAACTTTCGCTCATGGCAAATCACTCGGCGGCCACATGAAGGCCCATTTCGCCACACTCCCTCTTCCGCCCAAGCCTCAACCACCACCGCCATCACTGCCTTCACCTTCATTCTCATCTTCTTCCTCACAAGATTCAGACGACAAGGCTCTGATTTATGGCCTCAGAGAAAATCCCAAGAAAAGCTTCAAGCTCGCAGATCTTGAGTTCTCTTTCGTAGATATTACTGCTGGCTCTGTTATTGTTCAGGACCGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCTCCTTCGATCCAAGCGAACCAGAACCCAGAGGTTAATATCACCCAAAAAGCCTAAACCGAGCCTCTCCCAGTCACCGCCGCCCACTGAACCCGAACCGGCGAGCTCTGTTTCTGAAACTAGCACTGAAGAAGATGTCGCCATGTGTCTCATTATGCTCTCCAGAGACAAATGGAAGAGAAGCGCCGTGAAGGAAGAAGAAGATCGAGACGAGAAATCGAAGCGATTCAAGGAGATCAAGGTGAAGAAAGGAGTTCGCGGTAAGCACCAGTGTGAGAAATGTAGAAAAACGTTTCGATCGTTTCGAGCATTGGGGAGTCACACAAACGTCTGCTTTCGCGATGAAAAAGAAGCTAGAAACGCAGGTAACAACAACAACAACGACTTGATTTTCGAATGCCCATTTTGTTACAAGGTGTTCGGGTCAGGTCAAGCACTCGGAGGCCACAAGAGATCTCATCTTGTACAATCTTCATCATCAACATTGAACGATTCCGCAGCATTAATTAAGCAAAGCTTCATAGATCTCAACTTGCCAGCTCCAGCCGCAGCCGCAGCAGCAGCAGCAGAAGATGAACTCAGTGTGGTTTCTGATGCATAA 918 0.4847 MEEKHKCKLCSRTFAHGKSLGGHMKAHFATLPLPPKPQPPPPSLPSPSFSSSSSQDSDDKALIYGLRENPKKSFKLADLEFSFVDITAGSVIVQDRESETESKNPTLLRSKRTRTQRLISPKKPKPSLSQSPPPTEPEPASSVSETSTEEDVAMCLIMLSRDKWKRSAVKEEEDRDEKSKRFKEIKVKKGVRGKHQCEKCRKTFRSFRALGSHTNVCFRDEKEARNAGNNNNNDLIFECPFCYKVFGSGQALGGHKRSHLVQSSSSTLNDSAALIKQSFIDLNLPAPAAAAAAAAEDELSVVSDA 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0345 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Lele54g0345 305 Pfam C2H2-type zinc finger 195 214 - -
Lele54g0345 305 Pfam C2H2-type zinc finger 237 259 - -
Lele54g0345 305 Pfam C2H2-type zinc finger 5 27 - -
Lele54g0345 305 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Lele54g0345 305 MobiDBLite consensus disorder prediction 27 65 - -
Lele54g0345 305 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Lele54g0345 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Lele54g0345 305 MobiDBLite consensus disorder prediction 32 47 - -
Lele54g0345 305 Gene3D Classic Zinc Finger 192 259 - -
Lele54g0345 305 SUPERFAMILY beta-beta-alpha zinc fingers 195 259 IPR036236 -
Lele54g0345 305 MobiDBLite consensus disorder prediction 109 125 - -
Lele54g0345 305 SMART c2h2final6 5 27 IPR013087 -
Lele54g0345 305 SMART c2h2final6 195 215 IPR013087 -
Lele54g0345 305 SMART c2h2final6 237 259 IPR013087 -
Lele54g0345 305 MobiDBLite consensus disorder prediction 95 149 - -
Lele54g0345 305 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Lele54g0345 305 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 304 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0345 Lele-ChrLele54 2991141 2992058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0345 3 302 C2H2 Transcription Factor Family AT3G60580 37.346 1.63e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele54g0345 zf-C2H2_6 1.3e-10 CL0361