Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0330 ATGGCACCAAAAAACCAGACTAATTCACCCATTAGGAAATTGATTAACAGAGGAGCTTGGACTCCCGAGGAAGATCGAAAACTTGCTCAATGCATTGAACTTCATGGCGCTAAGAGGTGGAAGTCCATTGCTCTTAAATCAGGTTTAAACAGATGTGGCAAGAGTTGCAGGCTGAGATGGCTCAACTATCTCAGGCCAAACATCAAGAGAGGCAACATTTCACTTGAAGAAGAAGATCTAATCCTCAGGCTTCACAAACTTCTGGGAAACAGGTGGTCATTGATAGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGTAAATAGTGAAGAGAAGAAGAAGAAGAAGAAGAAGCCAAACACTTCATCAACCCCACAAGAAGAAAGTACGCCCCAAAATACTTGCGAGGATAGTGCTATTGTGGAGAATAATAATAATGAGGAAGCCCTTAATGGGAATAGTGGAATTGTGAACTCAGAAGTTAGTTTTGATGTGAATGAGTTCCTTGACTTCTCTCCCAAAGAAGGAGGATCCTTTCACGAATTGGATTGGGTGAACAAGTATCTAGAGCTAGATGAGTTTCCAGGGACCAATGGGGAATTTTGA 642 0.4143 MAPKNQTNSPIRKLINRGAWTPEEDRKLAQCIELHGAKRWKSIALKSGLNRCGKSCRLRWLNYLRPNIKRGNISLEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNSEEKKKKKKKPNTSSTPQEESTPQNTCEDSAIVENNNNEEALNGNSGIVNSEVSFDVNEFLDFSPKEGGSFHELDWVNKYLELDEFPGTNGEF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0330 213 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lele54g0330 213 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 14 158 - -
Lele54g0330 213 CDD SANT 19 64 IPR001005 -
Lele54g0330 213 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lele54g0330 213 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Lele54g0330 213 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lele54g0330 213 Gene3D - 74 146 - -
Lele54g0330 213 MobiDBLite consensus disorder prediction 121 147 - -
Lele54g0330 213 FunFam Transcription factor TT2 73 144 - -
Lele54g0330 213 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Lele54g0330 213 Gene3D - 17 69 - -
Lele54g0330 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Lele54g0330 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Lele54g0330 213 SMART sant 16 66 IPR001005 -
Lele54g0330 213 SMART sant 69 117 IPR001005 -
Lele54g0330 213 CDD SANT 74 115 IPR001005 -
Lele54g0330 213 FunFam MYB-related transcription factor 16 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0330 Lele-ChrLele54 2871881 2873044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0330 15 167 MYB Transcription Factor Family AT3G13540 52.564 1.30e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g0330 Myb_DNA-binding 2.8e-18 CL0123