Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0328 ATGTATATACCTCAGCTCTCAACAAACACTAATTCAATTCTTCCTCACCACACTTCTCTTTCTTCTACCTCCTCCTCCTCCTCCTCTTCCAGTACCACAGAAGCCGTTAATGTACACCACGAAGCTCAAGAAGCTCATCACAAAGAAGAGAAGGTGAAGAAGAATAAGACGATGACGAGTAACAAGAACGCAGACATGACCGAGGGAAAGCACCCAACTTACAGAGGCGTACGAATGCGTCAATGGGGGAAATGGGTTTCAGAAATCAGAGAACCCAGAAAGAAATCCAGAATATGGCTCGGCACTTTTCCTACTGCAGAAATGGCGGCTCGAGCTCACGACGTCGCCGCTCTCACCATCAAAGGCAGCTCTGCTTTCCTCAACTTCCCGGAGCTAGCGGCGGTGCTTCCTCGTCCTGCCAGTAACTCCCCAAAGGACGTACAAGCCGCCGCCGCCAAGGCAGCCTCCATCAATTACCAAATAAACCGTCAAGAAGCCGAAGCCGAATCCGAGCTCATGCAAGCCGATGCTCCACCACTGTCTAGTTCGCCGTTAACGGACGAGGACGACACGTTCTTCAACCTCCCCGACATCTTAAACCACAGCCGCGGCGCCGACGAGTTTCATTACTCCTCGCTTTGGCTTCTAGCCGGCGCCGATTACAGAGACTCAGGTTTCCGGCTCGAAGAGCCATTTCTATGGGACTCTTATTAG 714 0.5168 MYIPQLSTNTNSILPHHTSLSSTSSSSSSSSTTEAVNVHHEAQEAHHKEEKVKKNKTMTSNKNADMTEGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALTIKGSSAFLNFPELAAVLPRPASNSPKDVQAAAAKAASINYQINRQEAEAESELMQADAPPLSSSPLTDEDDTFFNLPDILNHSRGADEFHYSSLWLLAGADYRDSGFRLEEPFLWDSY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0328 237 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Lele54g0328 237 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Lele54g0328 237 MobiDBLite consensus disorder prediction 1 71 - -
Lele54g0328 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 40 203 - -
Lele54g0328 237 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Lele54g0328 237 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Lele54g0328 237 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Lele54g0328 237 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Lele54g0328 237 MobiDBLite consensus disorder prediction 1 38 - -
Lele54g0328 237 MobiDBLite consensus disorder prediction 39 58 - -
Lele54g0328 237 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Lele54g0328 237 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Lele54g0328 237 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0328 Lele-ChrLele54 2848210 2849668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0328 70 233 AP2-EREBP Transcription Factor Family AT2G44940 51.741 3.51e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele54g0328 AP2 1.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0533 50 3199740 3206259 Lele54g0328 54 2848210 2849668 CCT
Lele51g0518 51 3054932 3060212 Lele54g0328 54 2848210 2849668 CCT
Lele52g0533 52 3263481 3270443 Lele54g0328 54 2848210 2849668 CCT
Lele54g0328 54 2848210 2849668 Lele55g1158 55 18142148 18142873 hybridization
Lele54g0328 54 2848210 2849668 Lele56g1107 56 14548948 14550740 hybridization