Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0321 ATGCTCTCAAATCACGATTTTGCCTTAAATCTCAGCTTGAGCTTCCCTCACTCCGCTCTTAATCCCATCAAATCTTCAGATCGGTGTTCTGAAGGATGCAGAGGTGAAGCTCGGTCGTCTGTCGGAGTAATCGACGTGAATCGATTGCCGTCGGAGGTCGATTGCGAAGAGGAGGCGGGGATTTCGTCTCCGAACAGCACGATTTCGAGCGTGAGCGGTAAGCGAAGCGAGAGAGATCAGACCAATAGTAGCGAAGAGAACGAAACGGACAGAGCTTATTCTCGAGGGATCAGTGATGAAGAAGACAACGAAACTTCCAGAAAGAAGCTCAGGCTCTCCAAAGATCAATCGGCTATTCTCGAAGAGAGCTTCAAAGAGCACAATACTCTCAATCCCAAGCAAAAGTTGGCACTGGCGAAGCAGTTAGGGCTGAGACCTCGACAAGTGGAGGTCTGGTTCCAGAACAGGAGAGCGAGGACGAAGCTGAAGCAAACGGAGGTGGATTGTGAGTTCTTGAAGAGATGTTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGAGGTGCAGGAGCTGAGAGCACTGAAACTTTCCCCACAACTGTACATGCAAATGACCCCACCCACTACTCTCACCATGTGCCCATCTTGTGAGAGGTTTGGTGGTCGGCCCATTTCTCTCGGGCCATGGGCCGTTCCTCAGCCCAACTCGCATCTTGTTCGTCCCAGGTCGTGA 738 0.5136 MLSNHDFALNLSLSFPHSALNPIKSSDRCSEGCRGEARSSVGVIDVNRLPSEVDCEEEAGISSPNSTISSVSGKRSERDQTNSSEENETDRAYSRGISDEEDNETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERFGGRPISLGPWAVPQPNSHLVRPRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0321 245 FunFam Homeobox-leucine zipper protein 18 93 168 - -
Lele54g0321 245 Gene3D - 111 161 - -
Lele54g0321 245 Pfam Homeodomain 107 161 IPR001356 GO:0003677
Lele54g0321 245 SMART halz 163 206 IPR003106 GO:0006355|GO:0043565
Lele54g0321 245 SMART HOX_1 105 167 IPR001356 GO:0003677
Lele54g0321 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 222 - -
Lele54g0321 245 Coils Coil 162 199 - -
Lele54g0321 245 Pfam HD-ZIP protein N terminus 23 79 IPR006712 GO:0005634
Lele54g0321 245 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Lele54g0321 245 CDD homeodomain 107 164 IPR001356 GO:0003677
Lele54g0321 245 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Lele54g0321 245 SUPERFAMILY Homeodomain-like 98 164 IPR009057 -
Lele54g0321 245 PRINTS Lambda-repressor HTH signature 143 159 IPR000047 GO:0003677
Lele54g0321 245 PRINTS Lambda-repressor HTH signature 134 143 IPR000047 GO:0003677
Lele54g0321 245 MobiDBLite consensus disorder prediction 78 111 - -
Lele54g0321 245 MobiDBLite consensus disorder prediction 60 77 - -
Lele54g0321 245 MobiDBLite consensus disorder prediction 55 111 - -
Lele54g0321 245 Pfam Homeobox associated leucine zipper 163 197 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0321 Lele-ChrLele54 2763691 2764830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0321 1 233 Homeobox Transcription Factor Family AT5G47370 60.606 4.61e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele54g0321 HD-ZIP_N 2.8e-15 No_clan