LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele54g0316	ATGGCAAACTCTGTTGAGCTTTCGGCCCTCGACCGCATAAAGTTGCATCTTCTAGGTGAATTGTCTCCAGTTGGCACTTTCTCCGGTGGCCTTAGCAGTTCAGCGAGCGATGCTAATCCACAATTCTGGTTTGGTGAATCAAACGGAGCAATTTCCAGCTCTGAATCTGACTCTCTTTGTGCCCAATCATCGAGTTCTGACTCTTCGATCGCTGTGTCCGATTACCTCCCCGAACTCTTCGAATTCCCATCCAGCTCCACAGATCTATTTGAGTTCGAGTTCAAAAATCATGTTATTGACCTCTCAACGCCTAAATTGGAAAACGAAACTTCCCAATTTGATGCCAATTTCTCCCAATTCGAAGCAAACTCACAGGCAACATCAACCTCTGGCTCACAGTCCAGAAGTTCCATGTTCGAGTTTCAAACTAGGCCTCAAAGCGTCGAGAAGAAATCTCATTTGAACCGGAAACCATCTTTGCAAATCGCGCTACCCAAAAAAACCGAGTGGATCCAATTTGGAAACCCGGATCAACAACAGGAGGTTACAGAAATGTTCGTGCAGAATAATTCAAACCATGAAGAGAAAAGGCACTATAGAGGGGTCCGACAGAGACCATGGGGCAAGTTCGCAGCCGAGATTCGGGACCCGAAAAAGCGTGGATCTAGGGTGTGGCTCGGAACGTTCGACTCGAAGATAGAAGCCGCAAAAGCCTACGATCGAGCTGCGTTTAGGCTTCGCGGCTCCAAAGCCATACTCAATTTCCCTCTGGAAGTAGGAACCTCCGGTTCGACCGACGGCATGGAGGAGAAAAAACGCCGGCGTGAAGATGATGAGGTGGAGGCTGAAATTGAGACGGTGAAGAAAGAGAAAACGACCGAATCTGACGTGGGAGGGATAAGGGATATGCCGTTAACACCTTCAATGTGGACGGGGTTCTGGGAGAATGATTTGAAGGACATTTTCCCAGTCCCGCCGTTATCACCGTTATCTCCTCATCCGTCTTTGGGCTATCCACAGCTTATGGTTGTATGA	1035	0.4831	MANSVELSALDRIKLHLLGELSPVGTFSGGLSSSASDANPQFWFGESNGAISSSESDSLCAQSSSSDSSIAVSDYLPELFEFPSSSTDLFEFEFKNHVIDLSTPKLENETSQFDANFSQFEANSQATSTSGSQSRSSMFEFQTRPQSVEKKSHLNRKPSLQIALPKKTEWIQFGNPDQQQEVTEMFVQNNSNHEEKRHYRGVRQRPWGKFAAEIRDPKKRGSRVWLGTFDSKIEAAKAYDRAAFRLRGSKAILNFPLEVGTSGSTDGMEEKKRRREDDEVEAEIETVKKEKTTESDVGGIRDMPLTPSMWTGFWENDLKDIFPVPPLSPLSPHPSLGYPQLMVV	344

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele54g0316	344	CDD	AP2	198	256	IPR001471	GO:0003700\|GO:0006355
	Lele54g0316	344	PRINTS	Ethylene responsive element binding protein signature	199	210	IPR001471	GO:0003700\|GO:0006355
	Lele54g0316	344	PRINTS	Ethylene responsive element binding protein signature	238	258	IPR001471	GO:0003700\|GO:0006355
	Lele54g0316	344	Pfam	AP2 domain	198	248	IPR001471	GO:0003700\|GO:0006355
	Lele54g0316	344	MobiDBLite	consensus disorder prediction	122	141	-	-
	Lele54g0316	344	PANTHER	DNA-BINDING DOMAIN	132	274	IPR044808	GO:0003700\|GO:0009873
	Lele54g0316	344	SMART	rav1_2	198	262	IPR001471	GO:0003700\|GO:0006355
	Lele54g0316	344	FunFam	Ethylene-responsive transcription factor 2	197	258	-	-
	Lele54g0316	344	ProSiteProfiles	AP2/ERF domain profile.	198	256	IPR001471	GO:0003700\|GO:0006355
	Lele54g0316	344	Gene3D	AP2/ERF domain	197	258	IPR036955	GO:0003700\|GO:0006355
	Lele54g0316	344	SUPERFAMILY	DNA-binding domain	198	258	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele54g0316	Lele-ChrLele54	2713469	2714503	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele54g0316	1	344	AP2-EREBP Transcription Factor Family	AT5G47230	45.640	7.28e-68	213

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele54g0316		AP2	6.9e-15	CL0081