Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0312 ATGGCCTACACACTTAGGCAAAGAAAGCAAAACACTAATTATGCAGATTCAGACGGTCCTGGAAGTGATTCGATTGGTTCTGATACAGACTATTTATCAAGGAGCTGCAGTAGACGAAAAAATAGAAGGAACTTGACATTATCCTCTCCAACTACAAAGGAGACTAAAACAGCAAACTCAAGTGTAAATTTAACTGCAAGACGTGGACGAGGTCGAACCTCAAGGAAGAGGACACGGGAAGTACGAAACAAGGAAGCCAGTGATGCTCCAAGTTCAAACAAGAAAAATGAAACATTGTCTGCTGAACAACCACGTTCAAACAAAATAACCATTTTATCATGGTTGGTAGATTGCAATGTTATCAAGGAGGGTGAACATGTCACCTACTCGAATGAAATGAAGGGAAGTACAGCTAAGAGAGGAAGAATTGCTGGAGGTGGAATTCTCTGCAGCTGTTGCCAGAGGGAATATTCTGTGTGGGCATTTGAGAAACATTGTGGAAGTGATCTTAAACAACCCTATGAACATATTTACCTCCTTGAAAAACAAACATCTCTTCTGGAGTCCATGATGATTGCTTGGCACGCAAACAGTGAACTTAAACACCGGGAAACACATTCATTTGTACCCAAAAGAAATGCTAGAGACAAGCATGATTATGCTTGTCCAGTTTGTGGAGATGGGGGAGACTTGATCTGCTGTGAGAAGTGCCCTTCCACATATCATTTAAACTGTTTGAATTTGGAGAGTCTTCCTCAAGGTGCATGGTTTTGTCCTTATTGTGTATGCAAACATTGTGGGCTTGGTGGTAAAAGCAAGCAATTGATTACGTGCTTCCAATGTAACAAAAAATTTGAATGGGGATGCTTTAAGGAATTTGAGAAAGAAGCTCTTAAAGATGCCTTAGGCCTTAACTGTTCGAGATTATATTGTGGGCGAAGTTGTAGAAAGGCCTATGAGAAATTGGAGAGTTTAGTTGGAGTAAGGAACGAACTCGATGAAAATTTCTCTTGGAGAGTTGTTCGACAAATGGATGGGACGCCAACTGTCTCTGAACACCAATATTTTGAAAATAATGTCAAGGTTGTGATTACGCGGAAATTAATGGATGAAGCTTTTGAGACAATAGTTGACAGACACACAGGCCTCAACGTGGTTCAAAGTGTAGTATACAGTCTTGGGTCAAACTTACCCAGGGTTGATTATAGCCGTTTCTATACATTTATACTGGAAAAAGATGATGAGGTTGTATCTGCTGCTTCTGTGAGAATCCACGGGCGGAGGCTTGCAGATATGCCCGTTATGGCCACACATAAAAATTATCGAGGAAAAGGATTCGGTGGACGGCTTCTAGAAGTTGTGGAATTAGTCTTACGCGATCTTCAACTAGAAAACTTGATAATCCCGTCTATCCAGGAGAGGGTCAGCATGTGGAAGCAAAAGTTTGGATTCAGCGATCCAAATATCGAGTTGAAAAGAGAGATCGCTTCGTTTAACATTCTGATGTTTTATCAATCTGTAATGCTGTATAAGGACTTAAGGATGCAGGCACCCGAATCAGAAGATAAAAATGAACCTAAAATTAATCCTGTTGGACGTTCGCTGCTCGACCTCAACATGCCCCCACCTGAAGAACGCATGAGGTCTGGGGAATATGATGTACAGCTTGTAGCTCGTAGCTAA 1683 0.413 MAYTLRQRKQNTNYADSDGPGSDSIGSDTDYLSRSCSRRKNRRNLTLSSPTTKETKTANSSVNLTARRGRGRTSRKRTREVRNKEASDAPSSNKKNETLSAEQPRSNKITILSWLVDCNVIKEGEHVTYSNEMKGSTAKRGRIAGGGILCSCCQREYSVWAFEKHCGSDLKQPYEHIYLLEKQTSLLESMMIAWHANSELKHRETHSFVPKRNARDKHDYACPVCGDGGDLICCEKCPSTYHLNCLNLESLPQGAWFCPYCVCKHCGLGGKSKQLITCFQCNKKFEWGCFKEFEKEALKDALGLNCSRLYCGRSCRKAYEKLESLVGVRNELDENFSWRVVRQMDGTPTVSEHQYFENNVKVVITRKLMDEAFETIVDRHTGLNVVQSVVYSLGSNLPRVDYSRFYTFILEKDDEVVSAASVRIHGRRLADMPVMATHKNYRGKGFGGRLLEVVELVLRDLQLENLIIPSIQERVSMWKQKFGFSDPNIELKREIASFNILMFYQSVMLYKDLRMQAPESEDKNEPKINPVGRSLLDLNMPPPEERMRSGEYDVQLVARS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0312 560 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 400 485 IPR016181 -
Lele54g0312 560 CDD PHD2_CHD_II 222 261 - -
Lele54g0312 560 ProSiteProfiles Zinc finger PHD-type profile. 219 264 IPR019787 -
Lele54g0312 560 Gene3D - 368 499 - -
Lele54g0312 560 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 363 516 IPR000182 GO:0016747
Lele54g0312 560 MobiDBLite consensus disorder prediction 1 32 - -
Lele54g0312 560 CDD NAT_SF 408 468 - -
Lele54g0312 560 Pfam Tify domain binding domain 141 191 IPR032308 -
Lele54g0312 560 PANTHER PHD FINGER PROTEIN 12 40 531 IPR042163 GO:0003714|GO:0045892
Lele54g0312 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 309 IPR013083 -
Lele54g0312 560 MobiDBLite consensus disorder prediction 518 549 - -
Lele54g0312 560 Pfam PHD-finger 222 263 IPR019787 -
Lele54g0312 560 MobiDBLite consensus disorder prediction 42 68 - -
Lele54g0312 560 SMART PHD_3 221 262 IPR001965 -
Lele54g0312 560 MobiDBLite consensus disorder prediction 1 103 - -
Lele54g0312 560 SUPERFAMILY FYVE/PHD zinc finger 214 263 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0312 Lele-ChrLele54 2669313 2677336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0312 91 513 PHD Transcription Factor Family AT1G05380 37.182 9.97e-95 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele54g0312 TDBD 1.2e-14 No_clan