Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0301 ATGGTTAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAACCCTAGTAAATTATACCCCTTTACATGCTCGGACAGAAATGGATGATTATGAGGATCAAAGGCTTTCTAGGGCAAAGAACATATCATTATATAAGAACAAAGAAGTGAAATTTCTCAAACGAAAGCAGAACCATGACGATTTAGCATCTGGTTGGGTTGCCCCTGATTACAACCATGGATCTCAAAAGGTTATAGATGAAGCTGCAAGCAATAGATCAAGTTCAGGATCATCTGTCTCTAACTCTGAGAGCTGTGCTCAATTTGCTGGAACAGATGCTAGTGACTTGACAGGTCCTGCTCAGTCAATGGTGGGGGAAGGTATGGTGCCCTCAAAAAAGAGAACCTGTGTGAACCGTAAAAAGCCATCTCCTGTGGAGAAGCTCACAAAAGATTTATATACTATCCTTCATGAACAGCAGTGCTATTTCTCCGCATCTTCTGAAGAGGATCTTATTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTTATTAGGCATCCAAGCTCTATAGCCCGTGAAGAAGAATCTGAGGCCAGCTCCCTTTCAGTTGATAACAAACAATGCCCAACGATTGAGGCATATTCATGCTCTGGTGCTGTTGATATGCATAATGATTTCACTGGCATGAACTTTCCATCTCAGGGAATTGGAAATATCAACTACTCTGCTAGCCAAGGAATTCAGCGGGAGAGACTTAAAAGGGAGCCTGAAACTTCACAAATCTTTGGATATGATTCACCACTGTGCTTGATAGATTTAATTGATGTTGTAAACTATGAGGTGTTCTTGACAAACATGACAAATGAGGAGCAGCAAAAATTACTGAAATGTCTCCCTTCAGTTGATACCACTAAACTTCCTGACAGCCTTAAAAGCATGTTCAACAGCTCTCAGTTCAGAAAGAACTTAACTTACTTTCAACAGCTTCTTGGGGAAGGTCTCTTTGATACCTCTTCATCGGGGACAAAGGCTGGAGACTGCCAGGATTTGAAACGACTCGCATTATCTGATTTTTCACAGTCAAAATGGGTGGAACAATATCATTCACTTAAGAGATGTAAATACCAAGATGAAAAATCTGCTGCTCTTGGATGTACTGGCACTGCATCCAGTAATGCTGCAAACGAGAAGAGATCTTGTGACAGCTCAAAACAAAGTTTTCCTGAACTGAAGTCAACAGTTAGGAGCCCCCAAAGGGTGATCATGAAGGCTGGTAGTCAGAGCAAGGAAGTCATTGAAGATGACTCTTGCTTCAGTCCAAAAGGCCTATTGGCTTTTCCCGCCAATAGCAGCCCACATATGCTGTATTCTTTCAACTTCGTCGACGAGAGTTCTGATCAAGATCTTCTGCTTGAAGTGCAATCTAACAGTTCATTTCCAGAAGCAGAACTGCTGCATCCAACCTTAAGATTCGGTTCTCTGCCGAGCACTAGCAGTAGCTCAGCTTACCAGCATGGTGCCCATTACTGA 1611 0.4289 MVKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHARTEMDDYEDQRLSRAKNISLYKNKEVKFLKRKQNHDDLASGWVAPDYNHGSQKVIDEAASNRSSSGSSVSNSESCAQFAGTDASDLTGPAQSMVGEGMVPSKKRTCVNRKKPSPVEKLTKDLYTILHEQQCYFSASSEEDLIFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPTIEAYSCSGAVDMHNDFTGMNFPSQGIGNINYSASQGIQRERLKREPETSQIFGYDSPLCLIDLIDVVNYEVFLTNMTNEEQQKLLKCLPSVDTTKLPDSLKSMFNSSQFRKNLTYFQQLLGEGLFDTSSSGTKAGDCQDLKRLALSDFSQSKWVEQYHSLKRCKYQDEKSAALGCTGTASSNAANEKRSCDSSKQSFPELKSTVRSPQRVIMKAGSQSKEVIEDDSCFSPKGLLAFPANSSPHMLYSFNFVDESSDQDLLLEVQSNSSFPEAELLHPTLRFGSLPSTSSSSAYQHGAHY 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0301 536 MobiDBLite consensus disorder prediction 414 440 - -
Lele54g0301 536 Pfam Asx homology domain 292 366 IPR028020 -
Lele54g0301 536 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lele54g0301 536 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lele54g0301 536 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Lele54g0301 536 Gene3D - 292 387 IPR038108 -
Lele54g0301 536 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 46 - -
Lele54g0301 536 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 291 400 IPR044867 -
Lele54g0301 536 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Lele54g0301 536 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lele54g0301 536 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Lele54g0301 536 PANTHER OSJNBB0038F03.10 PROTEIN 7 519 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0301 Lele-ChrLele54 2548253 2553439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0301 1 513 C2C2-Gata Transcription Factor Family AT4G17570 50.000 1.13e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele54g0301 ASXH 9e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0476 49 2841410 2843437 Lele54g0301 54 2548253 2553439 CCT
Lele54g0301 54 2548253 2553439 Lele55g1186 55 18484412 18492267 hybridization
Lele54g0301 54 2548253 2553439 Lele56g1137 56 14850365 14855757 hybridization