Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0280 ATGTCTCTCTCTTCTTTGTGTTCTCTTCTTCTCACCACCACCTTGCTTTTCATGCAAAATCTGGCAGTAATCGACGCTGTGTGTTCCGATTGTTTTGTATCTTCTCGAGCATCCTATTACCCAAACTCTGATGAAAATGGAACAGATGTAGGTGCATGTGGGTTTGGTTCCTTTGGTGCTACCGTCAATGGCGGGGACGTCTCAGCTGCTTCTAATCTTTATCGTGATGGTCTCGGCTGTGGTGCCTGTTACCAGGTGAGGTGTAAGAACAGTGGTTATTGCTCAGACAATGGCGTGACGATAGTGATAACAGACCAAGGTTCAGGCCATGACACTGATTTCATTCTTAGCAAACGAGCTTTCACTCACATGGCTCAGACCAATGATGCTGCTGCGACTTTGTTGGCTTATGGCGTCGTTGATATTGAATACAGAAGAGTTTCATGCAGCTACCCATCCAAAAATATCACTATTAAGATACATGCAAGTAGCAGCAACCCCTATTACTTGGCATTCGTCATAGAGTACCAACAAGGCAAGAGAGATATCACTGCTGTGCAGCTCTGTGAGACCCAGAACTTTGTGTGCAAGTTGCTAACTAGGAGTTTTGGAGCGGTGTGGACTGTAAACAATCCTCCAAGTGGACCATTATCAGTGAGGATGTTGTTTAGTGATGATGATGGAGAAGACACGTGGGTCGTTCCTGTGAATAATATTCCTCAAGACTGGAAAGCTGGAGAAGCCTACGATTCTGGGGTTCAAGTGAACCAATAG 774 0.4522 MSLSSLCSLLLTTTLLFMQNLAVIDAVCSDCFVSSRASYYPNSDENGTDVGACGFGSFGATVNGGDVSAASNLYRDGLGCGACYQVRCKNSGYCSDNGVTIVITDQGSGHDTDFILSKRAFTHMAQTNDAAATLLAYGVVDIEYRRVSCSYPSKNITIKIHASSSNPYYLAFVIEYQQGKRDITAVQLCETQNFVCKLLTRSFGAVWTVNNPPSGPLSVRMLFSDDDGEDTWVVPVNNIPQDWKAGEAYDSGVQVNQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0280 257 Gene3D - 22 149 IPR036908 -
Lele54g0280 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 154 IPR007112 -
Lele54g0280 257 PANTHER EXPANSIN-B3 16 254 - -
Lele54g0280 257 Gene3D - 150 252 IPR036749 -
Lele54g0280 257 Pfam Expansin C-terminal domain 156 235 IPR007117 -
Lele54g0280 257 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lele54g0280 257 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Lele54g0280 257 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Lele54g0280 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Lele54g0280 257 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Lele54g0280 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 251 IPR007117 -
Lele54g0280 257 SUPERFAMILY PHL pollen allergen 154 251 IPR036749 -
Lele54g0280 257 SUPERFAMILY Barwin-like endoglucanases 24 153 IPR036908 -
Lele54g0280 257 Pfam Lytic transglycolase 70 142 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0280 Lele-ChrLele54 2365460 2367586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0280 15 253 Expansin Gene Family AT4G17030 43.983 3.88e-65 201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0280 54 2365460 2367586 Lele55g1208 55 18710917 18713329 hybridization
Lele54g0280 54 2365460 2367586 Lele56g1157 56 15038441 15042369 hybridization