Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0276 ATGGTTTGCACTGCTAACGATATACAGGAGTGGAAAGATTTTCCAAAGGGACTTAGGGTTCTCCTCCTTGATGGAGACAGCAGTTCTGCTTCGGAGATAGGAACAAAGCTTGAGGCCATGGACTATATCGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCCAGCAAACCTGAAGGCTTCCATGTTGCCATAGTGGAGGTTAGTACCAGCAGCCCGGGAAGTTTCAAAATTCTTGAGTATGCTAAAGATTTGCCCACCATCATGACTTCAAACGATCCCTGCTTGAGCACCATGATGAAGTGTGTAGCGCTTGGTGCAGTTGAGTTCCTAAGCAAACCACTCTCTGAGGAAAAACTCAGGAATATCTGGCAGCATGTTGTTCACAAGGCATTCAACACTGGGACAAGTGTCCTGCCTAAATCACTAGAACCTGTCAGAGAATCAGAGGTATTGCAGCTTCAAACAGACGGCAGAGAGCATGGAAGTGTAAATTTAGAGGAGTCTAGGTTCAGTGATGATGACCATGAGCAGTCTGCAGGAAGTGACAAGTACCCAGCTCCTTCAACTCCACAATTAAAACAGGGGGCAAGTTTAATGGACGATGGAGATTGCCAAGAACAAACTATTTGTTCAACAGAAAAGGAAAGTGAAGACCATGATGGGGAATCTAAATTTGTCGAAACTACATGTGGGGTTTTGAATGCTGAAGGTATTCTGCAACCAGTAAAACCTGAAAAGGCTCTGAAGAACATGGAAGATGAGAGCCTTGCAAATGATTCTAAGAGTGAGAAATTTGTTTCTCCACCTGTAAATGATGGTGTTCTCAGCAACATTGAAGGTGATACTGTATCTCCAAATAAAGCAGGTGTTCATAGCGATTCCCGTCAAATCAAAACTAAGAAGAAGTTTCAGGTAGACTGGACACCTCAGCTGCAAAAAAAGTTTGTGAAGGCAGTGGAACAATTAGGGGTTGATCAAGCCATTCCTTCTCGGATACTGGAGATGATGAATGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAGGAGGCAAATCTTGCCAAAGGAAGATCGAAGATGGGTACAACAAAGTCCAGTTATGGCTTTCCATCCATATTATTCTAACTGCACCGCATCACCAGCTCCTGTGTATCCTTTCTGGGGACAATCTGGCAGTCAACCAGCCAGTATGCATGCTTGGGACCCACCTGGTTATCCCCCGTGGCATCCTGCTGAAAGTTGGCACTGGAAGCCATATGATAGGATACATGCAGATGCATGGGGTTGCCCAGTGTTGCCAGCTCCTCAAAGTCCTTGTATTTCGTACTCTCAAAATATACCAGGATGGCACAATGCTAATGCAGTTAATTATAGCGCCAACAAGTTACAAGATTCCTGTGAATATCATCCAGCAGAAGATGTTGTTGAAAAGGCAGTGAAGGAGGCAATAAGCAAGCCATGGCTACCAATGCCATTAGGCCTCAAACCTCCTTCCATTGATTGTGTGTTGACTGAACTCTCTAGGCAAGGCATTTCCACCATCCCTCCTTGCTCCAGGCATGATAAACCCAAACCCAAACCCGAACCCCAGTGA 1629 0.4487 MVCTANDIQEWKDFPKGLRVLLLDGDSSSASEIGTKLEAMDYIVSTFCDENEALSAISSKPEGFHVAIVEVSTSSPGSFKILEYAKDLPTIMTSNDPCLSTMMKCVALGAVEFLSKPLSEEKLRNIWQHVVHKAFNTGTSVLPKSLEPVRESEVLQLQTDGREHGSVNLEESRFSDDDHEQSAGSDKYPAPSTPQLKQGASLMDDGDCQEQTICSTEKESEDHDGESKFVETTCGVLNAEGILQPVKPEKALKNMEDESLANDSKSEKFVSPPVNDGVLSNIEGDTVSPNKAGVHSDSRQIKTKKKFQVDWTPQLQKKFVKAVEQLGVDQAIPSRILEMMNVEGLTRHNVASHLQKYRMHRRQILPKEDRRWVQQSPVMAFHPYYSNCTASPAPVYPFWGQSGSQPASMHAWDPPGYPPWHPAESWHWKPYDRIHADAWGCPVLPAPQSPCISYSQNIPGWHNANAVNYSANKLQDSCEYHPAEDVVEKAVKEAISKPWLPMPLGLKPPSIDCVLTELSRQGISTIPPCSRHDKPKPKPEPQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0276 542 FunFam Two-component response regulator 302 365 - -
Lele54g0276 542 MobiDBLite consensus disorder prediction 157 208 - -
Lele54g0276 542 Pfam Myb-like DNA-binding domain 310 358 IPR001005 -
Lele54g0276 542 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 308 360 IPR006447 GO:0003677
Lele54g0276 542 Gene3D - 18 139 - -
Lele54g0276 542 SUPERFAMILY Homeodomain-like 304 362 IPR009057 -
Lele54g0276 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 311 362 IPR017930 -
Lele54g0276 542 SUPERFAMILY CheY-like 16 133 IPR011006 -
Lele54g0276 542 FunFam Two-component response regulator-like APRR2 17 142 - -
Lele54g0276 542 Gene3D - 302 364 - -
Lele54g0276 542 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 529 IPR044825 GO:0003700|GO:0045893
Lele54g0276 542 ProSiteProfiles Response regulatory domain profile. 19 131 IPR001789 GO:0000160
Lele54g0276 542 MobiDBLite consensus disorder prediction 164 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0276 Lele-ChrLele54 2317141 2321343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0276 1 530 Response Regulator Gene Family AT4G18020 49.291 3.79e-134 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele54g0276 Myb_DNA-binding 1e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0432 49 2531245 2536337 Lele54g0276 54 2317141 2321343 CCT
Lele54g0276 54 2317141 2321343 Lele55g1213 55 18760328 18765650 hybridization
Lele54g0276 54 2317141 2321343 Lele56g1162 56 15081953 15086214 hybridization