Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0262 ATGGATTCCTGTTGTTATCTCGACAAGGATTCCATCTCCAAATCTATACTGGAATCAAGCATGAAGCCTTTGAAAAACCATCTCTCTTTCAACGATTCTTCTCAAAATCTAAATTCCAACTCTAATCCTACTTTTAACCCTAATTTCTCCCTTAGTACCGAGGAAACCGGTTGGGGTTACTGCACCGAAGAACAATTAGAAGAAATTCTATTAAAAAACTTGGAATATTTATATAATGAAGCTGTATCAAAGCTTGTTGCGTTGGGCTACGATGAGGACGTTGCTATCAAAGCAATATTGCGAAATGGGCACTGTTATGGTGGAATGGATGTGCTCACCAATATATTACATAATTCGTTGGCTTATTTGAATAGTAACTGTAGTAGTACTACTGCTATTAGTAATGGCAACTCGGATGAGTCCGATCCTGTTTTCTCCGACTTGAGGCAGTTGGAGGAGTACTCTCTGGAAGGTATGGTCGGTTTGCTACAACAAATCAGGCCGCATTTGAGTGAAGGCGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGACAGGCAAGTGCTATGGAAATTCCTGTGCTTCCTGCTCCAGGTAATGGTTGTCCAGCTCCTAGTGCCTCTGAGGCTGTTAGCAATTCAGTTGGTGTTTTGGCCCCTGCCCTGTGTAGGTTTCATGGGGGTTGGGGATTTGGAAATGGGGGAGTCTCAGATCTCCCCTTCAATGGGCTCTTCTCTTATAGTGCAGAGATGAATTTACAAAGAGATATTGAACTTCCCAAAAGTTTTAATCTTTCTCCTTCATTGAAGTCTTTATTGAGAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAATTTGAAAGAATTGCAGGCACAAGCTAAGGCCTCACCTGGCGTTAGCACTTTGTTAAGCTTGGAATCTCCAGTTGTATCTGGGACTGATGTCCCAACTGCGCAGTCTGGGAATTCTCAGAATCTGAATAACCATGATGCTGTGAACTCATTGTTGAGCACATTCCGAGATCTGGATCTTGATGAGAATTTGGAGTTTGTGACAGATGATCAGAAAGATGAGGTAATTGTCACTCTATTTCATCAGATTAAGGATCTTGAGAAACAGGTAAAGGAGCGAAAAGATTGGGCCCATCAGAAGGCAATGCAGGCCGCAAGAAAGCTTAGCAATGAGTTGACTGAGCTGAAAATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCGCTTGAGGACACAACCATGAAAAGACTCTCAGAGACTGAGAATGCTTTAAGAAAGGCCAGTGGTCAAGTGGACCGTGCAAATGCAGCTGTGAGACGGCTTGAGATAGAGAAAGCAGAAATTAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATTAGAATCAGTCACAACTTGCTTGCAAGCTGCAAAGAGGGAGAAAAAGTGCATGAGGAGGCTTGTATCTTGGGAAAAACAGAAAGCCCAGCTGCAGCAAGAGATTTCAGGTGAGAAAGAGAAGATATTGGAGATACAGGAAGAATTGGTCCGGATTAAACAGCATCAAAAAGATGCTGAGGTCAAGTGGAGGAAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGGATTAGTTGAGGAGGAGCGACGTGCTAAGGAAGCAGCGGAGGCTAATAATAAGCGTAAGCTTGAAGCTTTGCGCCTAAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTACTAAGACTTGAGCAGGAGCTCTCACGCTTAAAAGCATCTGTTCAGTCTGCTGAGTTTCAAAATCAATCAAATACTTCACTGGCAAGTGAGTCTGAGGGTGCAAAGCCCCAAAGAGAGACAATTGCAAAGATGCTTCAAGAATTAGATAAACTGGAGGCATTTTCAGATAAAGAAGTAAACTGTGATAGGGAATGCATAATATGCATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCTTGTGCTCACCAAGTTTTGTGTGCTAGTTGCAGTGATGAGTATGGGCTGAGAAAGGGCAAAGCTGCATGTCCTTGCTGTCATGTTCCAATCGAGCAGAGGATTCGCGTGTTTGGGGCAAGTTCGTAG 2121 0.4309 MDSCCYLDKDSISKSILESSMKPLKNHLSFNDSSQNLNSNSNPTFNPNFSLSTEETGWGYCTEEQLEEILLKNLEYLYNEAVSKLVALGYDEDVAIKAILRNGHCYGGMDVLTNILHNSLAYLNSNCSSTTAISNGNSDESDPVFSDLRQLEEYSLEGMVGLLQQIRPHLSEGDAMWCLLMSDLHVGQASAMEIPVLPAPGNGCPAPSASEAVSNSVGVLAPALCRFHGGWGFGNGGVSDLPFNGLFSYSAEMNLQRDIELPKSFNLSPSLKSLLRRNVAMFAAGFRANLKELQAQAKASPGVSTLLSLESPVVSGTDVPTAQSGNSQNLNNHDAVNSLLSTFRDLDLDENLEFVTDDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSNELTELKMLRMEREETQRLKKGKQALEDTTMKRLSETENALRKASGQVDRANAAVRRLEIEKAEIKAEMEASKLSALESVTTCLQAAKREKKCMRRLVSWEKQKAQLQQEISGEKEKILEIQEELVRIKQHQKDAEVKWRKELKAKEEALGLVEEERRAKEAAEANNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASVQSAEFQNQSNTSLASESEGAKPQRETIAKMLQELDKLEAFSDKEVNCDRECIICMKDEVSVVFLPCAHQVLCASCSDEYGLRKGKAACPCCHVPIEQRIRVFGASS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0262 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 703 IPR013083 -
Lele54g0262 706 ProSiteProfiles Zinc finger RING-type profile. 651 692 IPR001841 -
Lele54g0262 706 SMART ring_2 651 691 IPR001841 -
Lele54g0262 706 Coils Coil 386 416 - -
Lele54g0262 706 PANTHER OS05G0141500 PROTEIN 46 701 IPR046934 -
Lele54g0262 706 Pfam Family of unknown function (DUF6592) 73 192 IPR046527 -
Lele54g0262 706 Coils Coil 540 570 - -
Lele54g0262 706 Coils Coil 431 472 - -
Lele54g0262 706 Coils Coil 579 606 - -
Lele54g0262 706 SUPERFAMILY RING/U-box 639 698 - -
Lele54g0262 706 Coils Coil 487 521 - -
Lele54g0262 706 Pfam Zinc finger, C3HC4 type (RING finger) 648 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0262 Lele-ChrLele54 2214082 2218513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0262 651 702 C3H Transcription Factor Family AT1G73950 48.077 5.68e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0446 50 2560880 2563009 Lele54g0262 54 2214082 2218513 CCT
Lele51g0428 51 2468466 2470590 Lele54g0262 54 2214082 2218513 CCT
Lele52g0444 52 2627610 2629712 Lele54g0262 54 2214082 2218513 CCT
Lele49g0416 49 2415567 2418667 Lele54g0262 54 2214082 2218513 CCT
Lele54g0262 54 2214082 2218513 Lele56g1174 56 15207853 15208398 hybridization