Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0260 ATGGCCGAGAAGTCAAGAAGACCTGATGAAGAGTTGAAAGTGCTTGACAAAAGCACCATCCATCAAAATTTGGATGTGTACATATGGGACATGGATGAGACCCTTATACTGCTGAACTCTTTGCTGAAGGAGTCCTATGCAGAGGCTTTTAATGGCTTGAAGGATGTTCAGAAGGGTGTGGAGATTGGGAGGATGTGGGAAAAGCTCATCCTGCAATTATGTGATGGTTATTTCTTCTATGAGCAAATTGAAAATTACAATAAGCCATTTCTTGATATTTTGAGCCAATATGATGATGGAAGGGACCTCTCTGATTATGACTTCAACCAAGATGGTTTGGGTTCTTCCCACGATGATGATGACAACAAAAGAAAGCTTGCATATAGGCATCGAGTTATAGCCCAAAAGTACATATTGGGTTTAAAGAATCTTTTGGATCAAGAGACAGTTAAACTCTGGGATCAATTGTATGAGACAACTGATGCATATACTGATAGATGGCTTTCCTCAGCACGGGCATTTCTGAAGGAGTGTTTGGGTGACAATAAGGATGCAGATTCCTCTGTCGTGCCTCCTGAGACTAGTGCTGACTCAACCAATATGACACGCCTGCGTGTTAACGTTTTAGTGACATCTGGATCGCTGATACCGACCCTTGTAAAATGCATGCTCTTCCGTATTGACAGCCTGATAACTCGTGAAAATATTTATAGCTCATGGGACGTGGGGAAAGTTCAGTGCTTCCGATGGATCAAGGAGCGTTTCGACCATCCCAATGTCCGTTTTTGTGTGATTGGAGACGGATGGGAAGAGTGTGAAGCGGCAAAAATCATGAGATGGCCATTTGTTAAGATTGATCCACGGCCAGGCACACCATACAGATTTCCTGGGCTCACATTGAGAACAGTGAGCCACTACTTTTCTGTGGTGTATGGAAGTCTGAATAATGAGAACGATGATGAACAATAA 969 0.4283 MAEKSRRPDEELKVLDKSTIHQNLDVYIWDMDETLILLNSLLKESYAEAFNGLKDVQKGVEIGRMWEKLILQLCDGYFFYEQIENYNKPFLDILSQYDDGRDLSDYDFNQDGLGSSHDDDDNKRKLAYRHRVIAQKYILGLKNLLDQETVKLWDQLYETTDAYTDRWLSSARAFLKECLGDNKDADSSVVPPETSADSTNMTRLRVNVLVTSGSLIPTLVKCMLFRIDSLITRENIYSSWDVGKVQCFRWIKERFDHPNVRFCVIGDGWEECEAAKIMRWPFVKIDPRPGTPYRFPGLTLRTVSHYFSVVYGSLNNENDDEQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0260 322 PANTHER EYES ABSENT 20 307 IPR028472 GO:0004725
Lele54g0260 322 SUPERFAMILY HAD-like 23 293 IPR036412 -
Lele54g0260 322 TIGRFAM EYA-cons_domain: EYA conserved domain 25 303 IPR006545 GO:0007275
Lele54g0260 322 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 25 286 - -
Lele54g0260 322 SFLD Haloacid Dehalogenase 25 286 - -
Lele54g0260 322 FunFam Eyes absent homolog 25 295 - -
Lele54g0260 322 Gene3D - 25 291 IPR038102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0260 Lele-ChrLele54 2200223 2201923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0260 24 321 Protein tyrosine phosphatase (PTP) family AT2G35320 58.725 1.27e-131 375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0260 54 2200223 2201923 Lele55g1230 55 18874788 18876450 hybridization
Lele54g0260 54 2200223 2201923 Lele56g1177 56 15228691 15230359 hybridization